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GrainGenes Marker Report: scssr02236

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Locus	scssr02236
Type	Microsatellite SNP
Synonym	Other name Ctig4370 Synonym ABC02236_L01R01
Chromosome	2H
Map	Barley-ConsensusFHB-2H 73.03 [ Show all 9 ]
	[ Show Nearby Loci ]
Map Data	[ Hide all but 1 of 9 ] Barley, Abiotic QTL Consensus Barley, Agronomic QTL Consensus Barley, Consensus 2005, SNP Barley, Consensus 2007, SSR Barley, Consensus 2023, FHB Barley, Integrated, Marcel 2009 Barley, OWB, 2005 Barley, OWB, OPA2008 Barley, OWB, SNP
Species	Hordeum vulgare
Probe	ABC02236_L01R01 scssr02236
Reference	Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140. Varshney RK et al. (2007) A high density barley microsatellite consensus map with 775 SSR loci. Theoretical and Applied Genetics 114:1091. Rostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527. Ramsay L et al. (2004) Variation shown by molecular markers in barley: genomic and genetic contraints Aspects of Applied Biology 72:146-154.
Data Source	Russell, Joanne
Remark	Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb' Mapping population(s) used for locus placement on the 'Barley, Integrated, Marcel 2009' Map Set = Oregon Wolfe Barleys Locus in 'Barley, Consensus 2007, SSR' mapped in population(s) : OWBrecessive x OWBdominant Insert contains repeat (GT)13 Developing laboratory = SCRI (R. Waugh)
Probe for Locus	ABC02236_L01R01
Locus	scssr02236
Data at Germinate	ABC02236
Data at PLEXdb	Barley1_02236
General Remarks	Estimated product size = 158 BarleySNP type = Contig Indel Technology platform used = Radioisotope Labelled PCR Separation Affymetrix contig name = abc02236
PCR primers	5' TTCCTGCTAGTTTGCTAATCG 5' TGGCGAGGAAGTAGAAGAGG
Sequence	Barley1_02236
Source Species	Hordeum vulgare