Query (optional)   in Class  

GrainGenes Marker Report: scssr25538

Locus
scssr25538
Type
Microsatellite
SNP
Synonym
Other nameCtig1552
SynonymABC25538_L01R01
Chromosome
3H
Map
[ Hide all but 1 of 9 ]
Barley, B73xCPI-3H140.7
Barley-ConsensusFHB-3H178.19
Hordeum-Consensus2005-SNP-3H162.743
Hordeum-Consensus2007-SSR-3H157.51
Hordeum-OWB-2005-3H212.2
Hordeum-OWB-SNP-3H220.5
Hordeum-QTLConsensus-Abiotic-3H162.74
Hordeum-QTLConsensus-Agronomic-3H162.74
Hv-Integrated2009-3H167.8
[ Show Nearby Loci ]
Map Data
Barley, Abiotic QTL Consensus
[ Show all 9 ]
Species
Hordeum vulgare
Probe
ABC25538_L01R01
scssr25538
Reference
ReferenceVarshney RK et al. (2007) A high density barley microsatellite consensus map with 775 SSR loci. Theoretical and Applied Genetics 114:1091.
ReferenceRostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527.
ReferenceRamsay L et al. (2004) Variation shown by molecular markers in barley: genomic and genetic contraints Aspects of Applied Biology 72:146-154.
Data Source
Russell, Joanne
Remark
Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb'
Mapping population(s) used for locus placement on the 'Barley, Integrated, Marcel 2009' Map Set = Oregon Wolfe Barleys
Locus in 'Barley, Consensus 2007, SSR' mapped in population(s) : OWBrecessive x OWBdominant
Insert contains repeat (CT)8
Developing laboratory = SCRI (R. Waugh)


Probe for Locus
ABC25538_L01R01
Locus
scssr25538
Data at Germinate
ABC25538
General Remarks
Estimated product size = 194
BarleySNP type = Contig Indel
Technology platform used = Radioisotope Labelled PCR Separation
Affymetrix contig name = abc25538
PCR primers
5' CCTCCCACTATCTCTTCTCTCC
5' GAGTGTTACTGCCGATTTGC
Source Species
Hordeum vulgare