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GrainGenes Probe Report: HORVU.MOREX.r2.1HG0003030

[Submit comment/correction][What is a probe?]Probes originated as records of the single stranded molecules used in RFLP mapping. This term has expanded to include PCR primers and SNPs.

Note: Probe report page includes probe information, gene models, PCR Primers, and SNPs.

Probe	HORVU.MOREX.r2.1HG0003030
Locus	HORVU.MOREX.r2.1HG0003030.1
URL	Gene Ontology GO:0004004 [ Show all 14 ]
Reference	Monat C et al. (2019) TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools Genome Biology 20:284.
General Remarks	[ Hide all but 1 of 17 ] Confidence level 1 = HC: High Confidence. Confidence level 2 = HC2: Complete protein with a BLAST hit in UniPoa (validated proteins from Poaceae), but no BLAST hit in UniMag (validated proteins from Magnoliophyta) or TREP (Triticeae REPetitive elements database). Functional annotation published with the genome: ATP synthase subunit b, chloroplastic GO:0003724; molecular_function; RNA helicase activity The GO term GO:0004004 was intially assigned to this transcript and is now obsolete. It has been replaced by: GO:0003724 GO:0000166; molecular_function; nucleotide binding GO:0000464; biological_process; endonucleolytic cleavage in ITS1 upstream of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) GO:0003676; molecular_function; nucleic acid binding GO:0003723; molecular_function; RNA binding GO:0004386; molecular_function; helicase activity GO:0005524; molecular_function; ATP binding GO:0005634; cellular_component; nucleus GO:0005730; cellular_component; nucleolus GO:0006364; biological_process; rRNA processing GO:0008186; molecular_function; RNA-dependent ATPase activity GO:0016787; molecular_function; hydrolase activity GO:0030687; cellular_component; preribosome, large subunit precursor GO:0042254; biological_process; ribosome biogenesis
Type	Genomic
Sequence	HORVU.MOREX.r2.1HG0003030.1
Source Species	Hordeum vulgare
Source Germplasm	Morex (barley)