Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Probe Report: HORVU.MOREX.r2.1HG0008940

[Submit comment/correction][What is a probe?]Probes originated as records of the single stranded molecules used in RFLP mapping. This term has expanded to include PCR primers and SNPs.

Note: Probe report page includes probe information, gene models, PCR Primers, and SNPs.

Probe	HORVU.MOREX.r2.1HG0008940
Locus	HORVU.MOREX.r2.1HG0008940.1
URL	Gene Ontology GO:0005216 [ Show all 40 ]
Reference	Monat C et al. (2019) TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools Genome Biology 20:284.
General Remarks	[ Hide all but 1 of 42 ] Confidence level 1 = HC: High Confidence. Confidence level 2 = HC2: Complete protein with a BLAST hit in UniPoa (validated proteins from Poaceae), but no BLAST hit in UniMag (validated proteins from Magnoliophyta) or TREP (Triticeae REPetitive elements database). Functional annotation published with the genome: F-box family protein GO:0005216; molecular_function; ion channel activity GO:0005244; molecular_function; voltage-gated ion channel activity GO:0005245; molecular_function; voltage-gated calcium channel activity GO:0005248; molecular_function; voltage-gated sodium channel activity GO:0005262; molecular_function; calcium channel activity GO:0005737; cellular_component; cytoplasm GO:0005886; cellular_component; plasma membrane GO:0005891; cellular_component; voltage-gated calcium channel complex GO:0006811; biological_process; ion transport GO:0006816; biological_process; calcium ion transport GO:0007204; biological_process; positive regulation of cytosolic calcium ion concentration GO:0008332; molecular_function; low voltage-gated calcium channel activity GO:0014824; biological_process; artery smooth muscle contraction GO:0016020; cellular_component; membrane GO:0016021; cellular_component; integral component of membrane GO:0019228; biological_process; neuronal action potential GO:0030425; cellular_component; dendrite GO:0034765; biological_process; regulation of ion transmembrane transport GO:0035725; biological_process; sodium ion transmembrane transport GO:0043025; cellular_component; neuronal cell body GO:0044297; cellular_component; cell body GO:0045956; biological_process; positive regulation of calcium ion-dependent exocytosis GO:0048471; cellular_component; perinuclear region of cytoplasm GO:0051924; biological_process; regulation of calcium ion transport GO:0055085; biological_process; transmembrane transport GO:0060402; biological_process; calcium ion transport into cytosol GO:0070509; biological_process; calcium ion import GO:0070588; biological_process; calcium ion transmembrane transport GO:0071549; biological_process; cellular response to dexamethasone stimulus GO:0086002; biological_process; cardiac muscle cell action potential involved in contraction GO:0086010; biological_process; membrane depolarization during action potential GO:0086015; biological_process; SA node cell action potential GO:0086016; biological_process; AV node cell action potential GO:0086018; biological_process; SA node cell to atrial cardiac muscle cell signaling GO:0086027; biological_process; AV node cell to bundle of His cell signaling GO:0086045; biological_process; membrane depolarization during AV node cell action potential GO:0086046; biological_process; membrane depolarization during SA node cell action potential GO:0086056; molecular_function; voltage-gated calcium channel activity involved in AV node cell action potential GO:0086059; molecular_function; voltage-gated calcium channel activity involved SA node cell action potential GO:0086091; biological_process; regulation of heart rate by cardiac conduction
Type	Genomic
Sequence	HORVU.MOREX.r2.1HG0008940.1
Source Species	Hordeum vulgare
Source Germplasm	Morex (barley)