Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Probe Report: HORVU.MOREX.r2.1HG0009120

[Submit comment/correction][What is a probe?]Probes originated as records of the single stranded molecules used in RFLP mapping. This term has expanded to include PCR primers and SNPs.

Note: Probe report page includes probe information, gene models, PCR Primers, and SNPs.

Probe	HORVU.MOREX.r2.1HG0009120
Locus	HORVU.MOREX.r2.1HG0009120.1
URL	Gene Ontology GO:0000165 [ Show all 24 ]
Reference	Monat C et al. (2019) TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools Genome Biology 20:284.
General Remarks	[ Hide all but 1 of 26 ] Confidence level 1 = HC: High Confidence. Confidence level 2 = HC2: Complete protein with a BLAST hit in UniPoa (validated proteins from Poaceae), but no BLAST hit in UniMag (validated proteins from Magnoliophyta) or TREP (Triticeae REPetitive elements database). Functional annotation published with the genome: Remorin family protein GO:0000165; biological_process; MAPK cascade GO:0000166; molecular_function; nucleotide binding GO:0000186; biological_process; activation of MAPKK activity GO:0004672; molecular_function; protein kinase activity GO:0004674; molecular_function; protein serine/threonine kinase activity GO:0004709; molecular_function; MAP kinase kinase kinase activity GO:0005524; molecular_function; ATP binding GO:0005737; cellular_component; cytoplasm GO:0006281; biological_process; DNA repair GO:0006468; biological_process; protein phosphorylation GO:0006974; biological_process; cellular response to DNA damage stimulus GO:0007095; biological_process; mitotic G2 DNA damage checkpoint GO:0007346; biological_process; regulation of mitotic cell cycle GO:0007399; biological_process; nervous system development GO:0016301; molecular_function; kinase activity GO:0016310; biological_process; phosphorylation GO:0016740; molecular_function; transferase activity GO:0031098; biological_process; stress-activated protein kinase signaling cascade GO:0032874; biological_process; positive regulation of stress-activated MAPK cascade GO:0042981; biological_process; regulation of apoptotic process GO:0046329; biological_process; negative regulation of JNK cascade GO:0046330; biological_process; positive regulation of JNK cascade GO:0046777; biological_process; protein autophosphorylation GO:0097194; biological_process; execution phase of apoptosis
Type	Genomic
Sequence	HORVU.MOREX.r2.1HG0009120.1
Source Species	Hordeum vulgare
Source Germplasm	Morex (barley)