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GrainGenes Probe Report: HORVU.MOREX.r2.1HG0039070

[Submit comment/correction][What is a probe?]Probes originated as records of the single stranded molecules used in RFLP mapping. This term has expanded to include PCR primers and SNPs.

Note: Probe report page includes probe information, gene models, PCR Primers, and SNPs.

Probe	HORVU.MOREX.r2.1HG0039070
Locus	HORVU.MOREX.r2.1HG0039070.1
URL	Gene Ontology GO:0001843 [ Show all 78 ]
Reference	Monat C et al. (2019) TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools Genome Biology 20:284.
General Remarks	[ Hide all but 1 of 80 ] Confidence level 1 = HC: High Confidence. Confidence level 2 = HC2: Complete protein with a BLAST hit in UniPoa (validated proteins from Poaceae), but no BLAST hit in UniMag (validated proteins from Magnoliophyta) or TREP (Triticeae REPetitive elements database). Functional annotation published with the genome: Transposon protein, putative, Mutator sub-class, expressed GO:0001843; biological_process; neural tube closure GO:0001933; biological_process; negative regulation of protein phosphorylation GO:0003344; biological_process; pericardium morphogenesis GO:0005041; molecular_function; low-density lipoprotein particle receptor activity GO:0005102; molecular_function; signaling receptor binding GO:0005109; molecular_function; frizzled binding GO:0005515; molecular_function; protein binding GO:0005576; cellular_component; extracellular region GO:0005783; cellular_component; endoplasmic reticulum GO:0005886; cellular_component; plasma membrane GO:0006355; biological_process; regulation of transcription, DNA-templated GO:0006469; biological_process; negative regulation of protein kinase activity GO:0006897; biological_process; endocytosis GO:0007204; biological_process; positive regulation of cytosolic calcium ion concentration GO:0007268; biological_process; chemical synaptic transmission GO:0007275; biological_process; multicellular organism development GO:0009880; biological_process; embryonic pattern specification GO:0009986; cellular_component; cell surface GO:0014029; biological_process; neural crest formation GO:0014033; biological_process; neural crest cell differentiation GO:0016020; cellular_component; membrane GO:0016021; cellular_component; integral component of membrane GO:0016055; biological_process; Wnt signaling pathway GO:0017147; molecular_function; Wnt-protein binding GO:0019210; molecular_function; kinase inhibitor activity GO:0019534; molecular_function; toxin transmembrane transporter activity GO:0021587; biological_process; cerebellum morphogenesis GO:0021794; biological_process; thalamus development GO:0021987; biological_process; cerebral cortex development GO:0030917; biological_process; midbrain-hindbrain boundary development GO:0031410; cellular_component; cytoplasmic vesicle GO:0031901; cellular_component; early endosome membrane GO:0034185; molecular_function; apolipoprotein binding GO:0034392; biological_process; negative regulation of smooth muscle cell apoptotic process GO:0035261; biological_process; external genitalia morphogenesis GO:0042475; biological_process; odontogenesis of dentin-containing tooth GO:0042802; molecular_function; identical protein binding GO:0042803; molecular_function; protein homodimerization activity GO:0042813; molecular_function; Wnt-activated receptor activity GO:0043025; cellular_component; neuronal cell body GO:0043235; cellular_component; receptor complex GO:0043434; biological_process; response to peptide hormone GO:0044332; biological_process; Wnt signaling pathway involved in dorsal/ventral axis specification GO:0044335; biological_process; canonical Wnt signaling pathway involved in neural crest cell differentiation GO:0044340; biological_process; canonical Wnt signaling pathway involved in regulation of cell proliferation GO:0045121; cellular_component; membrane raft GO:0045202; cellular_component; synapse GO:0045787; biological_process; positive regulation of cell cycle GO:0045893; biological_process; positive regulation of transcription, DNA-templated GO:0045944; biological_process; positive regulation of transcription by RNA polymerase II GO:0051091; biological_process; positive regulation of DNA-binding transcription factor activity GO:0060021; biological_process; roof of mouth development GO:0060026; biological_process; convergent extension GO:0060059; biological_process; embryonic retina morphogenesis in camera-type eye GO:0060070; biological_process; canonical Wnt signaling pathway GO:0060325; biological_process; face morphogenesis GO:0060535; biological_process; trachea cartilage morphogenesis GO:0060828; biological_process; regulation of canonical Wnt signaling pathway GO:0071397; biological_process; cellular response to cholesterol GO:0071542; biological_process; dopaminergic neuron differentiation GO:0071901; biological_process; negative regulation of protein serine/threonine kinase activity GO:0071936; molecular_function; coreceptor activity involved in Wnt signaling pathway GO:0072659; biological_process; protein localization to plasma membrane GO:0090009; biological_process; primitive streak formation GO:0090090; biological_process; negative regulation of canonical Wnt signaling pathway GO:0090118; biological_process; receptor-mediated endocytosis involved in cholesterol transport GO:0090244; biological_process; Wnt signaling pathway involved in somitogenesis GO:0090245; biological_process; axis elongation involved in somitogenesis GO:0090263; biological_process; positive regulation of canonical Wnt signaling pathway GO:0098609; biological_process; cell-cell adhesion GO:1901998; biological_process; toxin transport GO:1904886; biological_process; beta-catenin destruction complex disassembly GO:1904928; molecular_function; coreceptor activity involved in canonical Wnt signaling pathway GO:1904948; biological_process; midbrain dopaminergic neuron differentiation GO:1904953; biological_process; Wnt signaling pathway involved in midbrain dopaminergic neuron differentiation GO:1990851; cellular_component; Wnt-Frizzled-LRP5/6 complex GO:1990909; cellular_component; Wnt signalosome GO:2000055; biological_process; positive regulation of Wnt signaling pathway involved in dorsal/ventral axis specification
Type	Genomic
Sequence	HORVU.MOREX.r2.1HG0039070.1
Source Species	Hordeum vulgare
Source Germplasm	Morex (barley)