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GrainGenes Probe Report: HORVU.MOREX.r2.1HG0042700

[What is a probe?]Probes originated as records of the single stranded molecules used in RFLP mapping. This term has expanded to include PCR primers and SNPs.

Note: Probe report page includes probe information, gene models, PCR Primers, and SNPs.

Probe	HORVU.MOREX.r2.1HG0042700
Locus	HORVU.MOREX.r2.1HG0042700.1
URL	Gene Ontology GO:0000122 [ Show all 34 ]
Reference	Monat C et al. (2019) TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools Genome Biology 20:284.
General Remarks	[ Hide all but 1 of 36 ] Confidence level 1 = HC: High Confidence. Confidence level 2 = HC1: Complete protein with subject and query coverage above the BLAST threshold in the UniMag database (validated proteins from Magnoliophyta). Functional annotation published with the genome: Tobamovirus multiplication-like protein GO:0000122; biological_process; negative regulation of transcription by RNA polymerase II GO:0000166; molecular_function; nucleotide binding GO:0002039; molecular_function; p53 binding GO:0003677; molecular_function; DNA binding GO:0003678; molecular_function; DNA helicase activity GO:0003682; molecular_function; chromatin binding GO:0004386; molecular_function; helicase activity GO:0005515; molecular_function; protein binding GO:0005524; molecular_function; ATP binding GO:0005634; cellular_component; nucleus GO:0005654; cellular_component; nucleoplasm GO:0006325; biological_process; chromatin organization GO:0006351; biological_process; transcription, DNA-templated GO:0006355; biological_process; regulation of transcription, DNA-templated GO:0007420; biological_process; brain development GO:0008013; molecular_function; beta-catenin binding GO:0008094; molecular_function; DNA-dependent ATPase activity GO:0016055; biological_process; Wnt signaling pathway GO:0016787; molecular_function; hydrolase activity GO:0016817; molecular_function; hydrolase activity, acting on acid anhydrides GO:0030178; biological_process; negative regulation of Wnt signaling pathway GO:0032508; biological_process; DNA duplex unwinding GO:0032991; cellular_component; protein-containing complex GO:0035064; molecular_function; methylated histone binding GO:0042393; molecular_function; histone binding GO:0043044; biological_process; ATP-dependent chromatin remodeling GO:0045892; biological_process; negative regulation of transcription, DNA-templated GO:0045893; biological_process; positive regulation of transcription, DNA-templated GO:0045944; biological_process; positive regulation of transcription by RNA polymerase II GO:0045945; biological_process; positive regulation of transcription by RNA polymerase III GO:0048565; biological_process; digestive tract development GO:0060070; biological_process; canonical Wnt signaling pathway GO:0071339; cellular_component; MLL1 complex GO:0090090; biological_process; negative regulation of canonical Wnt signaling pathway
Type	Genomic
Sequence	HORVU.MOREX.r2.1HG0042700.1
Source Species	Hordeum vulgare
Source Germplasm	Morex (barley)