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GrainGenes Probe Report: HORVU.MOREX.r2.1HG0046260

[Submit comment/correction][What is a probe?]Probes originated as records of the single stranded molecules used in RFLP mapping. This term has expanded to include PCR primers and SNPs.

Note: Probe report page includes probe information, gene models, PCR Primers, and SNPs.

Probe	HORVU.MOREX.r2.1HG0046260
Locus	HORVU.MOREX.r2.1HG0046260.1
URL	Gene Ontology GO:0005634 [ Show all 31 ]
Reference	Monat C et al. (2019) TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools Genome Biology 20:284.
General Remarks	[ Hide all but 1 of 33 ] Confidence level 1 = HC: High Confidence. Confidence level 2 = HC2: Complete protein with a BLAST hit in UniPoa (validated proteins from Poaceae), but no BLAST hit in UniMag (validated proteins from Magnoliophyta) or TREP (Triticeae REPetitive elements database). Functional annotation published with the genome: GATA transcription factor GO:0005634; cellular_component; nucleus GO:0005635; cellular_component; nuclear envelope GO:0005654; cellular_component; nucleoplasm GO:0005719; cellular_component; nuclear euchromatin GO:0005737; cellular_component; cytoplasm GO:0005856; cellular_component; cytoskeleton GO:0005886; cellular_component; plasma membrane GO:0005938; cellular_component; cell cortex GO:0014069; cellular_component; postsynaptic density GO:0016020; cellular_component; membrane GO:0016363; cellular_component; nuclear matrix GO:0030054; cellular_component; cell junction GO:0030425; cellular_component; dendrite GO:0030863; cellular_component; cortical cytoskeleton GO:0031965; cellular_component; nuclear membrane GO:0035307; biological_process; positive regulation of protein dephosphorylation GO:0042995; cellular_component; cell projection GO:0043005; cellular_component; neuron projection GO:0043204; cellular_component; perikaryon GO:0043523; biological_process; regulation of neuron apoptotic process GO:0045202; cellular_component; synapse GO:0045211; cellular_component; postsynaptic membrane GO:0048168; biological_process; regulation of neuronal synaptic plasticity GO:0048306; molecular_function; calcium-dependent protein binding GO:0048814; biological_process; regulation of dendrite morphogenesis GO:0071230; biological_process; cellular response to amino acid stimulus GO:0071257; biological_process; cellular response to electrical stimulus GO:0071371; biological_process; cellular response to gonadotropin stimulus GO:0097440; cellular_component; apical dendrite GO:2001222; biological_process; regulation of neuron migration GO:2001224; biological_process; positive regulation of neuron migration
Type	Genomic
Sequence	HORVU.MOREX.r2.1HG0046260.1
Source Species	Hordeum vulgare
Source Germplasm	Morex (barley)