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GrainGenes Probe Report: HORVU.MOREX.r2.1HG0046300

[Submit comment/correction][What is a probe?]Probes originated as records of the single stranded molecules used in RFLP mapping. This term has expanded to include PCR primers and SNPs.

Note: Probe report page includes probe information, gene models, PCR Primers, and SNPs.

Probe	HORVU.MOREX.r2.1HG0046300
Locus	HORVU.MOREX.r2.1HG0046300.1
URL	Gene Ontology GO:0000139 [ Show all 19 ]
Reference	Monat C et al. (2019) TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools Genome Biology 20:284.
General Remarks	[ Hide all but 1 of 21 ] Confidence level 1 = HC: High Confidence. Confidence level 2 = HC1: Complete protein with subject and query coverage above the BLAST threshold in the UniMag database (validated proteins from Magnoliophyta). Functional annotation published with the genome: ATP-dependent RNA helicase GO:0000139; cellular_component; Golgi membrane GO:0000166; molecular_function; nucleotide binding GO:0005524; molecular_function; ATP binding GO:0005764; cellular_component; lysosome GO:0005765; cellular_component; lysosomal membrane GO:0005768; cellular_component; endosome GO:0005770; cellular_component; late endosome GO:0005794; cellular_component; Golgi apparatus GO:0010745; biological_process; negative regulation of macrophage derived foam cell differentiation GO:0016020; cellular_component; membrane GO:0016021; cellular_component; integral component of membrane GO:0016887; molecular_function; ATPase activity GO:0030301; biological_process; cholesterol transport GO:0031902; cellular_component; late endosome membrane GO:0033344; biological_process; cholesterol efflux GO:0034375; biological_process; high-density lipoprotein particle remodeling GO:0042626; molecular_function; ATPase-coupled transmembrane transporter activity GO:0043691; biological_process; reverse cholesterol transport GO:0055085; biological_process; transmembrane transport
Type	Genomic
Sequence	HORVU.MOREX.r2.1HG0046300.1
Source Species	Hordeum vulgare
Source Germplasm	Morex (barley)