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GrainGenes Probe Report: HORVU.MOREX.r2.1HG0047110

[Submit comment/correction][What is a probe?]Probes originated as records of the single stranded molecules used in RFLP mapping. This term has expanded to include PCR primers and SNPs.

Note: Probe report page includes probe information, gene models, PCR Primers, and SNPs.

Probe	HORVU.MOREX.r2.1HG0047110
Locus	HORVU.MOREX.r2.1HG0047110.1
URL	Gene Ontology GO:0005031 [ Show all 16 ]
Reference	Monat C et al. (2019) TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools Genome Biology 20:284.
General Remarks	[ Hide all but 1 of 18 ] Confidence level 1 = HC: High Confidence. Confidence level 2 = HC2: Complete protein with a BLAST hit in UniPoa (validated proteins from Poaceae), but no BLAST hit in UniMag (validated proteins from Magnoliophyta) or TREP (Triticeae REPetitive elements database). Functional annotation published with the genome: PAX-interacting protein 1 GO:0005031; molecular_function; tumor necrosis factor-activated receptor activity GO:0005634; cellular_component; nucleus GO:0005737; cellular_component; cytoplasm GO:0005886; cellular_component; plasma membrane GO:0005887; cellular_component; integral component of plasma membrane GO:0006954; biological_process; inflammatory response GO:0006955; biological_process; immune response GO:0007275; biological_process; multicellular organism development GO:0012501; biological_process; programmed cell death GO:0016020; cellular_component; membrane GO:0016021; cellular_component; integral component of membrane GO:0032496; biological_process; response to lipopolysaccharide GO:0033209; biological_process; tumor necrosis factor-mediated signaling pathway GO:0042127; biological_process; regulation of cell population proliferation GO:0042981; biological_process; regulation of apoptotic process GO:0097190; biological_process; apoptotic signaling pathway
Type	Genomic
Sequence	HORVU.MOREX.r2.1HG0047110.1
Source Species	Hordeum vulgare
Source Germplasm	Morex (barley)