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GrainGenes Probe Report: HORVU.MOREX.r2.1HG0062540

[Submit comment/correction][What is a probe?]Probes originated as records of the single stranded molecules used in RFLP mapping. This term has expanded to include PCR primers and SNPs.

Note: Probe report page includes probe information, gene models, PCR Primers, and SNPs.

Probe	HORVU.MOREX.r2.1HG0062540
Locus	HORVU.MOREX.r2.1HG0062540.1
URL	Gene Ontology GO:0000166 [ Show all 28 ]
Reference	Monat C et al. (2019) TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools Genome Biology 20:284.
General Remarks	[ Hide all but 1 of 30 ] Confidence level 1 = HC: High Confidence. Confidence level 2 = HC2: Complete protein with a BLAST hit in UniPoa (validated proteins from Poaceae), but no BLAST hit in UniMag (validated proteins from Magnoliophyta) or TREP (Triticeae REPetitive elements database). Functional annotation published with the genome: Protein kinase GO:0000166; molecular_function; nucleotide binding GO:0001172; biological_process; transcription, RNA-templated GO:0003723; molecular_function; RNA binding GO:0003968; molecular_function; RNA-directed 5'-3' RNA polymerase activity GO:0004197; molecular_function; cysteine-type endopeptidase activity GO:0004386; molecular_function; helicase activity GO:0005524; molecular_function; ATP binding GO:0006351; biological_process; transcription, DNA-templated GO:0006396; biological_process; RNA processing GO:0006508; biological_process; proteolysis GO:0008174; molecular_function; mRNA methyltransferase activity GO:0008233; molecular_function; peptidase activity GO:0008234; molecular_function; cysteine-type peptidase activity GO:0016020; cellular_component; membrane GO:0016740; molecular_function; transferase activity GO:0016779; molecular_function; nucleotidyltransferase activity GO:0016787; molecular_function; hydrolase activity GO:0016817; molecular_function; hydrolase activity, acting on acid anhydrides GO:0017111; molecular_function; nucleoside-triphosphatase activity GO:0033644; cellular_component; host cell membrane GO:0039694; biological_process; viral RNA genome replication GO:0044161; cellular_component; host cell cytoplasmic vesicle GO:0044174; cellular_component; host cell endosome GO:0044175; cellular_component; host cell endosome membrane GO:0044187; cellular_component; host cell lysosome GO:0044188; cellular_component; host cell lysosomal membrane GO:0046872; molecular_function; metal ion binding GO:0080009; biological_process; mRNA methylation
Type	Genomic
Sequence	HORVU.MOREX.r2.1HG0062540.1
Source Species	Hordeum vulgare
Source Germplasm	Morex (barley)