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GrainGenes Probe Report: HORVU.MOREX.r2.1HG0072930

[Submit comment/correction][What is a probe?]Probes originated as records of the single stranded molecules used in RFLP mapping. This term has expanded to include PCR primers and SNPs.

Note: Probe report page includes probe information, gene models, PCR Primers, and SNPs.

Probe	HORVU.MOREX.r2.1HG0072930
Locus	HORVU.MOREX.r2.1HG0072930.1
URL	Gene Ontology GO:0000187 [ Show all 87 ]
Reference	Monat C et al. (2019) TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools Genome Biology 20:284.
General Remarks	[ Hide all but 1 of 89 ] Confidence level 1 = HC: High Confidence. Confidence level 2 = HC2: Complete protein with a BLAST hit in UniPoa (validated proteins from Poaceae), but no BLAST hit in UniMag (validated proteins from Magnoliophyta) or TREP (Triticeae REPetitive elements database). Functional annotation published with the genome: Thiamine-phosphate synthase GO:0000187; biological_process; activation of MAPK activity GO:0001786; molecular_function; phosphatidylserine binding GO:0001937; biological_process; negative regulation of endothelial cell proliferation GO:0001953; biological_process; negative regulation of cell-matrix adhesion GO:0001968; molecular_function; fibronectin binding GO:0002040; biological_process; sprouting angiogenesis GO:0002581; biological_process; negative regulation of antigen processing and presentation of peptide or polysaccharide antigen via MHC class II GO:0002605; biological_process; negative regulation of dendritic cell antigen processing and presentation GO:0003151; biological_process; outflow tract morphogenesis GO:0003197; biological_process; endocardial cushion development GO:0003417; biological_process; growth plate cartilage development GO:0005178; molecular_function; integrin binding GO:0005509; molecular_function; calcium ion binding GO:0005515; molecular_function; protein binding GO:0005576; cellular_component; extracellular region GO:0005577; cellular_component; fibrinogen complex GO:0005615; cellular_component; extracellular space GO:0005737; cellular_component; cytoplasm GO:0005783; cellular_component; endoplasmic reticulum GO:0006954; biological_process; inflammatory response GO:0006986; biological_process; response to unfolded protein GO:0007050; biological_process; cell cycle arrest GO:0007155; biological_process; cell adhesion GO:0008201; molecular_function; heparin binding GO:0008284; biological_process; positive regulation of cell population proliferation GO:0009612; biological_process; response to mechanical stimulus GO:0009749; biological_process; response to glucose GO:0009897; cellular_component; external side of plasma membrane GO:0009986; cellular_component; cell surface GO:0010595; biological_process; positive regulation of endothelial cell migration GO:0010596; biological_process; negative regulation of endothelial cell migration GO:0010748; biological_process; negative regulation of long-chain fatty acid import across plasma membrane GO:0010751; biological_process; negative regulation of nitric oxide mediated signal transduction GO:0010754; biological_process; negative regulation of cGMP-mediated signaling GO:0010757; biological_process; negative regulation of plasminogen activation GO:0010759; biological_process; positive regulation of macrophage chemotaxis GO:0010763; biological_process; positive regulation of fibroblast migration GO:0010811; biological_process; positive regulation of cell-substrate adhesion GO:0016477; biological_process; cell migration GO:0016525; biological_process; negative regulation of angiogenesis GO:0016529; cellular_component; sarcoplasmic reticulum GO:0017134; molecular_function; fibroblast growth factor binding GO:0018149; biological_process; peptide cross-linking GO:0030141; cellular_component; secretory granule GO:0030169; molecular_function; low-density lipoprotein particle binding GO:0030194; biological_process; positive regulation of blood coagulation GO:0030198; biological_process; extracellular matrix organization GO:0030335; biological_process; positive regulation of cell migration GO:0030511; biological_process; positive regulation of transforming growth factor beta receptor signaling pathway GO:0030823; biological_process; obsolete regulation of cGMP metabolic process GO:0031012; cellular_component; extracellular matrix GO:0031091; cellular_component; platelet alpha granule GO:0032026; biological_process; response to magnesium ion GO:0032695; biological_process; negative regulation of interleukin-12 production GO:0034976; biological_process; response to endoplasmic reticulum stress GO:0040037; biological_process; negative regulation of fibroblast growth factor receptor signaling pathway GO:0042327; biological_process; positive regulation of phosphorylation GO:0042535; biological_process; positive regulation of tumor necrosis factor biosynthetic process GO:0043032; biological_process; positive regulation of macrophage activation GO:0043066; biological_process; negative regulation of apoptotic process GO:0043154; biological_process; negative regulation of cysteine-type endopeptidase activity involved in apoptotic process GO:0043236; molecular_function; laminin binding GO:0043536; biological_process; positive regulation of blood vessel endothelial cell migration GO:0043537; biological_process; negative regulation of blood vessel endothelial cell migration GO:0043652; biological_process; engulfment of apoptotic cell GO:0045727; biological_process; positive regulation of translation GO:0045766; biological_process; positive regulation of angiogenesis GO:0048266; biological_process; behavioral response to pain GO:0048514; biological_process; blood vessel morphogenesis GO:0048661; biological_process; positive regulation of smooth muscle cell proliferation GO:0050431; molecular_function; transforming growth factor beta binding GO:0050840; molecular_function; extracellular matrix binding GO:0050921; biological_process; positive regulation of chemotaxis GO:0051592; biological_process; response to calcium ion GO:0051897; biological_process; positive regulation of protein kinase B signaling GO:0051918; biological_process; negative regulation of fibrinolysis GO:0070051; molecular_function; fibrinogen binding GO:0070052; molecular_function; collagen V binding GO:0071636; biological_process; positive regulation of transforming growth factor beta production GO:0071732; biological_process; cellular response to nitric oxide GO:0090051; biological_process; negative regulation of cell migration involved in sprouting angiogenesis GO:1902043; biological_process; positive regulation of extrinsic apoptotic signaling pathway via death domain receptors GO:1903588; biological_process; negative regulation of blood vessel endothelial cell proliferation involved in sprouting angiogenesis GO:1903671; biological_process; negative regulation of sprouting angiogenesis GO:2000353; biological_process; positive regulation of endothelial cell apoptotic process GO:2000379; biological_process; positive regulation of reactive oxygen species metabolic process GO:2001027; biological_process; negative regulation of endothelial cell chemotaxis
Type	Genomic
Sequence	HORVU.MOREX.r2.1HG0072930.1
Source Species	Hordeum vulgare
Source Germplasm	Morex (barley)