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GrainGenes Probe Report: HORVU.MOREX.r2.1HG0076830

[Submit comment/correction][What is a probe?]Probes originated as records of the single stranded molecules used in RFLP mapping. This term has expanded to include PCR primers and SNPs.

Note: Probe report page includes probe information, gene models, PCR Primers, and SNPs.

Probe	HORVU.MOREX.r2.1HG0076830
Locus	HORVU.MOREX.r2.1HG0076830.1
URL	Gene Ontology GO:0003700 [ Show all 15 ]
Reference	Monat C et al. (2019) TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools Genome Biology 20:284.
General Remarks	[ Hide all but 1 of 17 ] Confidence level 1 = HC: High Confidence. Confidence level 2 = HC2: Complete protein with a BLAST hit in UniPoa (validated proteins from Poaceae), but no BLAST hit in UniMag (validated proteins from Magnoliophyta) or TREP (Triticeae REPetitive elements database). Functional annotation published with the genome: Polypyrimidine tract-binding-like protein, putative GO:0003700; molecular_function; DNA-binding transcription factor activity GO:0005739; cellular_component; mitochondrion GO:0006352; biological_process; DNA-templated transcription, initiation GO:0006355; biological_process; regulation of transcription, DNA-templated GO:0009553; biological_process; embryo sac development GO:0009658; biological_process; chloroplast organization GO:0010114; biological_process; response to red light GO:0010207; biological_process; photosystem II assembly GO:0010218; biological_process; response to far red light GO:0016987; molecular_function; sigma factor activity GO:0045893; biological_process; positive regulation of transcription, DNA-templated GO:0071472; biological_process; cellular response to salt stress GO:0071483; biological_process; cellular response to blue light GO:2000142; biological_process; regulation of DNA-templated transcription, initiation GO:2001141; biological_process; regulation of RNA biosynthetic process
Type	Genomic
Sequence	HORVU.MOREX.r2.1HG0076830.1
Source Species	Hordeum vulgare
Source Germplasm	Morex (barley)