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GrainGenes Probe Report: HORVU.MOREX.r2.1HG0078740

[Submit comment/correction][What is a probe?]Probes originated as records of the single stranded molecules used in RFLP mapping. This term has expanded to include PCR primers and SNPs.

Note: Probe report page includes probe information, gene models, PCR Primers, and SNPs.

Probe	HORVU.MOREX.r2.1HG0078740
Locus	HORVU.MOREX.r2.1HG0078740.1
URL	Gene Ontology GO:0000014 [ Show all 43 ]
Reference	Monat C et al. (2019) TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools Genome Biology 20:284.
General Remarks	[ Hide all but 1 of 45 ] Confidence level 1 = HC: High Confidence. Confidence level 2 = HC1: Complete protein with subject and query coverage above the BLAST threshold in the UniMag database (validated proteins from Magnoliophyta). Functional annotation published with the genome: Rho GDP-dissociation inhibitor 1 GO:0000014; molecular_function; single-stranded DNA endodeoxyribonuclease activity GO:0000729; biological_process; DNA double-strand break processing GO:0000737; biological_process; DNA catabolic process, endonucleolytic GO:0003677; molecular_function; DNA binding GO:0003690; molecular_function; double-stranded DNA binding GO:0003697; molecular_function; single-stranded DNA binding GO:0003824; molecular_function; catalytic activity GO:0004518; molecular_function; nuclease activity GO:0004519; molecular_function; endonuclease activity GO:0005515; molecular_function; protein binding GO:0005634; cellular_component; nucleus GO:0005694; cellular_component; chromosome GO:0005730; cellular_component; nucleolus GO:0006281; biological_process; DNA repair GO:0006303; biological_process; double-strand break repair via nonhomologous end joining GO:0006325; biological_process; chromatin organization GO:0006974; biological_process; cellular response to DNA damage stimulus GO:0008152; biological_process; metabolic process GO:0008168; molecular_function; methyltransferase activity GO:0008270; molecular_function; zinc ion binding GO:0008283; biological_process; cell population proliferation GO:0010452; biological_process; histone H3-K36 methylation GO:0015074; biological_process; DNA integration GO:0016740; molecular_function; transferase activity GO:0016787; molecular_function; hydrolase activity GO:0018024; molecular_function; histone-lysine N-methyltransferase activity GO:0031297; biological_process; replication fork processing GO:0032259; biological_process; methylation GO:0034968; biological_process; histone lysine methylation GO:0035861; cellular_component; site of double-strand break GO:0042800; molecular_function; histone methyltransferase activity (H3-K4 specific) GO:0042803; molecular_function; protein homodimerization activity GO:0044547; molecular_function; DNA topoisomerase binding GO:0044774; biological_process; mitotic DNA integrity checkpoint GO:0046872; molecular_function; metal ion binding GO:0046975; molecular_function; histone methyltransferase activity (H3-K36 specific) GO:0051568; biological_process; histone H3-K4 methylation GO:0071157; biological_process; negative regulation of cell cycle arrest GO:0090305; biological_process; nucleic acid phosphodiester bond hydrolysis GO:0097676; biological_process; histone H3-K36 dimethylation GO:2000373; biological_process; positive regulation of DNA topoisomerase (ATP-hydrolyzing) activity GO:2001034; biological_process; positive regulation of double-strand break repair via nonhomologous end joining GO:2001251; biological_process; negative regulation of chromosome organization
Type	Genomic
Sequence	HORVU.MOREX.r2.1HG0078740.1
Source Species	Hordeum vulgare
Source Germplasm	Morex (barley)