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GrainGenes Probe Report: HORVU.MOREX.r2.2HG0092740

[Submit comment/correction][What is a probe?]Probes originated as records of the single stranded molecules used in RFLP mapping. This term has expanded to include PCR primers and SNPs.

Note: Probe report page includes probe information, gene models, PCR Primers, and SNPs.

Probe	HORVU.MOREX.r2.2HG0092740
Locus	HORVU.MOREX.r2.2HG0092740.1
URL	Gene Ontology GO:0000018 [ Show all 30 ]
Reference	Monat C et al. (2019) TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools Genome Biology 20:284.
General Remarks	[ Hide all but 1 of 32 ] Confidence level 1 = HC: High Confidence. Confidence level 2 = HC2: Complete protein with a BLAST hit in UniPoa (validated proteins from Poaceae), but no BLAST hit in UniMag (validated proteins from Magnoliophyta) or TREP (Triticeae REPetitive elements database). Functional annotation published with the genome: Peroxiredoxin GO:0000018; biological_process; regulation of DNA recombination GO:0000346; cellular_component; transcription export complex GO:0000347; cellular_component; THO complex GO:0000445; cellular_component; THO complex part of transcription export complex GO:0000784; cellular_component; nuclear chromosome, telomeric region GO:0003677; molecular_function; DNA binding GO:0003723; molecular_function; RNA binding GO:0005515; molecular_function; protein binding GO:0005634; cellular_component; nucleus GO:0005654; cellular_component; nucleoplasm GO:0005737; cellular_component; cytoplasm GO:0005829; cellular_component; cytosol GO:0006351; biological_process; transcription, DNA-templated GO:0006355; biological_process; regulation of transcription, DNA-templated GO:0006397; biological_process; mRNA processing GO:0006406; biological_process; mRNA export from nucleus GO:0006915; biological_process; apoptotic process GO:0007165; biological_process; signal transduction GO:0008380; biological_process; RNA splicing GO:0016363; cellular_component; nuclear matrix GO:0016607; cellular_component; nuclear speck GO:0031297; biological_process; replication fork processing GO:0032784; biological_process; regulation of DNA-templated transcription, elongation GO:0032786; biological_process; positive regulation of DNA-templated transcription, elongation GO:0042981; biological_process; regulation of apoptotic process GO:0045171; cellular_component; intercellular bridge GO:0046784; biological_process; viral mRNA export from host cell nucleus GO:0048297; biological_process; negative regulation of isotype switching to IgA isotypes GO:0051028; biological_process; mRNA transport GO:2000002; biological_process; negative regulation of DNA damage checkpoint
Type	Genomic
Sequence	HORVU.MOREX.r2.2HG0092740.1
Source Species	Hordeum vulgare
Source Germplasm	Morex (barley)