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GrainGenes Probe Report: HORVU.MOREX.r2.2HG0105720

[Submit comment/correction][What is a probe?]Probes originated as records of the single stranded molecules used in RFLP mapping. This term has expanded to include PCR primers and SNPs.

Note: Probe report page includes probe information, gene models, PCR Primers, and SNPs.

Probe	HORVU.MOREX.r2.2HG0105720
Locus	HORVU.MOREX.r2.2HG0105720.1
URL	Gene Ontology GO:0033216 [ Show all 20 ]
Reference	Monat C et al. (2019) TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools Genome Biology 20:284.
General Remarks	[ Hide all but 1 of 24 ] Confidence level 1 = HC: High Confidence. Confidence level 2 = HC2: Complete protein with a BLAST hit in UniPoa (validated proteins from Poaceae), but no BLAST hit in UniMag (validated proteins from Magnoliophyta) or TREP (Triticeae REPetitive elements database). Functional annotation published with the genome: Auxin response factor GO:0006826; biological_process; iron ion transport The GO term GO:0033216 was intially assigned to this transcript and is now obsolete. It has been replaced by: GO:0006826 GO:0044847; biological_process; iron acquisition from host The GO term GO:0052099 was intially assigned to this transcript and is now obsolete. It has been replaced by: GO:0044847 GO:0000166; molecular_function; nucleotide binding GO:0005524; molecular_function; ATP binding GO:0005829; cellular_component; cytosol GO:0005886; cellular_component; plasma membrane GO:0009405; biological_process; pathogenesis GO:0010106; biological_process; cellular response to iron ion starvation GO:0015343; molecular_function; siderophore transmembrane transporter activity GO:0015891; biological_process; siderophore transport GO:0016020; cellular_component; membrane GO:0016021; cellular_component; integral component of membrane GO:0016787; molecular_function; hydrolase activity GO:0016887; molecular_function; ATPase activity GO:0040007; biological_process; growth GO:0042626; molecular_function; ATPase-coupled transmembrane transporter activity GO:0044718; biological_process; siderophore transmembrane transport GO:0055072; biological_process; iron ion homeostasis GO:0055085; biological_process; transmembrane transport GO:0075139; biological_process; response to host iron concentration
Type	Genomic
Sequence	HORVU.MOREX.r2.2HG0105720.1
Source Species	Hordeum vulgare
Source Germplasm	Morex (barley)