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GrainGenes Probe Report: HORVU.MOREX.r2.2HG0111870

[Submit comment/correction][What is a probe?]Probes originated as records of the single stranded molecules used in RFLP mapping. This term has expanded to include PCR primers and SNPs.

Note: Probe report page includes probe information, gene models, PCR Primers, and SNPs.

Probe	HORVU.MOREX.r2.2HG0111870
Locus	HORVU.MOREX.r2.2HG0111870.1
URL	Gene Ontology GO:0000082 [ Show all 31 ]
Reference	Monat C et al. (2019) TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools Genome Biology 20:284.
General Remarks	[ Hide all but 1 of 33 ] Confidence level 1 = HC: High Confidence. Confidence level 2 = HC2: Complete protein with a BLAST hit in UniPoa (validated proteins from Poaceae), but no BLAST hit in UniMag (validated proteins from Magnoliophyta) or TREP (Triticeae REPetitive elements database). Functional annotation published with the genome: Transposon protein Pong sub-class GO:0000082; biological_process; G1/S transition of mitotic cell cycle GO:0000932; cellular_component; P-body GO:0001843; biological_process; neural tube closure GO:0003723; molecular_function; RNA binding GO:0004842; molecular_function; ubiquitin-protein transferase activity GO:0005622; cellular_component; intracellular GO:0005737; cellular_component; cytoplasm GO:0007275; biological_process; multicellular organism development GO:0008270; molecular_function; zinc ion binding GO:0008543; biological_process; fibroblast growth factor receptor signaling pathway GO:0010586; biological_process; miRNA metabolic process GO:0010608; biological_process; posttranscriptional regulation of gene expression GO:0016567; biological_process; protein ubiquitination GO:0016740; molecular_function; transferase activity GO:0017148; biological_process; negative regulation of translation GO:0021915; biological_process; neural tube development GO:0030371; molecular_function; translation repressor activity GO:0031047; biological_process; gene silencing by RNA GO:0035196; biological_process; production of miRNAs involved in gene silencing by miRNA GO:0035198; molecular_function; miRNA binding GO:0035278; biological_process; miRNA mediated inhibition of translation GO:0046872; molecular_function; metal ion binding GO:0051246; biological_process; regulation of protein metabolic process GO:0051865; biological_process; protein autoubiquitination GO:0060964; biological_process; regulation of gene silencing by miRNA GO:0061158; biological_process; 3'-UTR-mediated mRNA destabilization GO:0061630; molecular_function; ubiquitin protein ligase activity GO:0071310; biological_process; cellular response to organic substance GO:0072089; biological_process; stem cell proliferation GO:2000177; biological_process; regulation of neural precursor cell proliferation GO:2000637; biological_process; positive regulation of gene silencing by miRNA
Type	Genomic
Sequence	HORVU.MOREX.r2.2HG0111870.1
Source Species	Hordeum vulgare
Source Germplasm	Morex (barley)