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GrainGenes Probe Report: HORVU.MOREX.r2.2HG0127090

[Submit comment/correction][What is a probe?]Probes originated as records of the single stranded molecules used in RFLP mapping. This term has expanded to include PCR primers and SNPs.

Note: Probe report page includes probe information, gene models, PCR Primers, and SNPs.

Probe	HORVU.MOREX.r2.2HG0127090
Locus	HORVU.MOREX.r2.2HG0127090.1
URL	Gene Ontology GO:0004003 [ Show all 22 ]
Reference	Monat C et al. (2019) TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools Genome Biology 20:284.
General Remarks	[ Hide all but 1 of 27 ] Confidence level 1 = HC: High Confidence. Confidence level 2 = HC1: Complete protein with subject and query coverage above the BLAST threshold in the UniMag database (validated proteins from Magnoliophyta). Functional annotation published with the genome: Homeobox protein knotted-1-like 1 GO:0003678; molecular_function; DNA helicase activity The GO term GO:0004003 was intially assigned to this transcript and is now obsolete. It has been replaced by: GO:0003678 GO:0003724; molecular_function; RNA helicase activity The GO term GO:0004004 was intially assigned to this transcript and is now obsolete. It has been replaced by: GO:0003724 GO:0043139; molecular_function; 5'-3' DNA helicase activity The GO term GO:0043141 was intially assigned to this transcript and is now obsolete. It has been replaced by: GO:0043139 GO:0000166; molecular_function; nucleotide binding GO:0003723; molecular_function; RNA binding GO:0004386; molecular_function; helicase activity GO:0005524; molecular_function; ATP binding GO:0005634; cellular_component; nucleus GO:0005694; cellular_component; chromosome GO:0005737; cellular_component; cytoplasm GO:0006260; biological_process; DNA replication GO:0006261; biological_process; DNA-dependent DNA replication GO:0006269; biological_process; DNA replication, synthesis of RNA primer GO:0006281; biological_process; DNA repair GO:0006396; biological_process; RNA processing GO:0006974; biological_process; cellular response to DNA damage stimulus GO:0016787; molecular_function; hydrolase activity GO:0017116; molecular_function; single-stranded DNA helicase activity GO:0032508; biological_process; DNA duplex unwinding GO:0035861; cellular_component; site of double-strand break GO:1903775; biological_process; regulation of DNA double-strand break processing GO:2000042; biological_process; negative regulation of double-strand break repair via homologous recombination
Type	Genomic
Sequence	HORVU.MOREX.r2.2HG0127090.1
Source Species	Hordeum vulgare
Source Germplasm	Morex (barley)