Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Probe Report: HORVU.MOREX.r2.2HG0141240

[Submit comment/correction][What is a probe?]Probes originated as records of the single stranded molecules used in RFLP mapping. This term has expanded to include PCR primers and SNPs.

Note: Probe report page includes probe information, gene models, PCR Primers, and SNPs.

Probe	HORVU.MOREX.r2.2HG0141240
Locus	HORVU.MOREX.r2.2HG0141240.1
URL	Gene Ontology GO:0004033 [ Show all 41 ]
Reference	Monat C et al. (2019) TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools Genome Biology 20:284.
General Remarks	[ Hide all but 1 of 43 ] Confidence level 1 = HC: High Confidence. Confidence level 2 = HC2: Complete protein with a BLAST hit in UniPoa (validated proteins from Poaceae), but no BLAST hit in UniMag (validated proteins from Magnoliophyta) or TREP (Triticeae REPetitive elements database). Functional annotation published with the genome: Pectinesterase inhibitor GO:0004033; molecular_function; aldo-keto reductase (NADP) activity GO:0005244; molecular_function; voltage-gated ion channel activity GO:0005249; molecular_function; voltage-gated potassium channel activity GO:0005515; molecular_function; protein binding GO:0005737; cellular_component; cytoplasm GO:0005829; cellular_component; cytosol GO:0005886; cellular_component; plasma membrane GO:0006811; biological_process; ion transport GO:0006813; biological_process; potassium ion transport GO:0007420; biological_process; brain development GO:0007507; biological_process; heart development GO:0007519; biological_process; skeletal muscle tissue development GO:0007611; biological_process; learning or memory GO:0008076; cellular_component; voltage-gated potassium channel complex GO:0015459; molecular_function; potassium channel regulator activity GO:0016020; cellular_component; membrane GO:0016021; cellular_component; integral component of membrane GO:0016491; molecular_function; oxidoreductase activity GO:0019904; molecular_function; protein domain specific binding GO:0030424; cellular_component; axon GO:0031234; cellular_component; extrinsic component of cytoplasmic side of plasma membrane GO:0032839; cellular_component; dendrite cytoplasm GO:0034220; biological_process; ion transmembrane transport GO:0034705; cellular_component; potassium channel complex GO:0034765; biological_process; regulation of ion transmembrane transport GO:0043025; cellular_component; neuronal cell body GO:0043204; cellular_component; perikaryon GO:0044224; cellular_component; juxtaparanode region of axon GO:0044325; molecular_function; ion channel binding GO:0045445; biological_process; myoblast differentiation GO:0055085; biological_process; transmembrane transport GO:0055114; biological_process; oxidation-reduction process GO:0060539; biological_process; diaphragm development GO:0070402; molecular_function; NADPH binding GO:0071805; biological_process; potassium ion transmembrane transport GO:1901016; biological_process; regulation of potassium ion transmembrane transporter activity GO:1901379; biological_process; regulation of potassium ion transmembrane transport GO:1902259; biological_process; regulation of delayed rectifier potassium channel activity GO:1902260; biological_process; negative regulation of delayed rectifier potassium channel activity GO:1903817; biological_process; negative regulation of voltage-gated potassium channel activity GO:1990635; cellular_component; proximal dendrite
Type	Genomic
Sequence	HORVU.MOREX.r2.2HG0141240.1
Source Species	Hordeum vulgare
Source Germplasm	Morex (barley)