Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Probe Report: HORVU.MOREX.r2.2HG0142270

[Submit comment/correction][What is a probe?]Probes originated as records of the single stranded molecules used in RFLP mapping. This term has expanded to include PCR primers and SNPs.

Note: Probe report page includes probe information, gene models, PCR Primers, and SNPs.

Probe	HORVU.MOREX.r2.2HG0142270
Locus	HORVU.MOREX.r2.2HG0142270.1
URL	Gene Ontology GO:0000712 [ Show all 19 ]
Reference	Monat C et al. (2019) TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools Genome Biology 20:284.
General Remarks	[ Hide all but 1 of 21 ] Confidence level 1 = HC: High Confidence. Confidence level 2 = HC2: Complete protein with a BLAST hit in UniPoa (validated proteins from Poaceae), but no BLAST hit in UniMag (validated proteins from Magnoliophyta) or TREP (Triticeae REPetitive elements database). Functional annotation published with the genome: Phage capsid scaffolding protein (GPO) serine peptidase GO:0000712; biological_process; resolution of meiotic recombination intermediates GO:0000724; biological_process; double-strand break repair via homologous recombination GO:0003677; molecular_function; DNA binding GO:0003682; molecular_function; chromatin binding GO:0003697; molecular_function; single-stranded DNA binding GO:0004518; molecular_function; nuclease activity GO:0004527; molecular_function; exonuclease activity GO:0005634; cellular_component; nucleus GO:0005694; cellular_component; chromosome GO:0005737; cellular_component; cytoplasm GO:0007129; biological_process; synapsis GO:0007140; biological_process; male meiotic nuclear division GO:0007141; biological_process; male meiosis I GO:0007144; biological_process; female meiosis I GO:0008310; molecular_function; single-stranded DNA 3'-5' exodeoxyribonuclease activity GO:0009566; biological_process; fertilization GO:0016787; molecular_function; hydrolase activity GO:0051321; biological_process; meiotic cell cycle GO:0090305; biological_process; nucleic acid phosphodiester bond hydrolysis
Type	Genomic
Sequence	HORVU.MOREX.r2.2HG0142270.1
Source Species	Hordeum vulgare
Source Germplasm	Morex (barley)