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GrainGenes Probe Report: HORVU.MOREX.r2.2HG0173980

[Submit comment/correction][What is a probe?]Probes originated as records of the single stranded molecules used in RFLP mapping. This term has expanded to include PCR primers and SNPs.

Note: Probe report page includes probe information, gene models, PCR Primers, and SNPs.

Probe	HORVU.MOREX.r2.2HG0173980
Locus	HORVU.MOREX.r2.2HG0173980.1
URL	Gene Ontology GO:0000256 [ Show all 14 ]
Reference	Monat C et al. (2019) TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools Genome Biology 20:284.
General Remarks	[ Hide all but 1 of 16 ] Confidence level 1 = HC: High Confidence. Confidence level 2 = HC2: Complete protein with a BLAST hit in UniPoa (validated proteins from Poaceae), but no BLAST hit in UniMag (validated proteins from Magnoliophyta) or TREP (Triticeae REPetitive elements database). Functional annotation published with the genome: DNA mismatch repair protein MutS2 GO:0000256; biological_process; allantoin catabolic process GO:0004038; molecular_function; allantoinase activity GO:0004519; molecular_function; endonuclease activity GO:0005524; molecular_function; ATP binding GO:0005634; cellular_component; nucleus GO:0006298; biological_process; mismatch repair GO:0008270; molecular_function; zinc ion binding GO:0016787; molecular_function; hydrolase activity GO:0016810; molecular_function; hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds GO:0016887; molecular_function; ATPase activity GO:0030983; molecular_function; mismatched DNA binding GO:0045910; biological_process; negative regulation of DNA recombination GO:0050897; molecular_function; cobalt ion binding GO:0090305; biological_process; nucleic acid phosphodiester bond hydrolysis
Type	Genomic
Sequence	HORVU.MOREX.r2.2HG0173980.1
Source Species	Hordeum vulgare
Source Germplasm	Morex (barley)