Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Probe Report: HORVU.MOREX.r2.3HG0205650

[Submit comment/correction][What is a probe?]Probes originated as records of the single stranded molecules used in RFLP mapping. This term has expanded to include PCR primers and SNPs.

Note: Probe report page includes probe information, gene models, PCR Primers, and SNPs.

Probe	HORVU.MOREX.r2.3HG0205650
Locus	HORVU.MOREX.r2.3HG0205650.1
URL	Gene Ontology GO:0001953 [ Show all 38 ]
Reference	Monat C et al. (2019) TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools Genome Biology 20:284.
General Remarks	[ Hide all but 1 of 40 ] Confidence level 1 = HC: High Confidence. Confidence level 2 = HC1: Complete protein with subject and query coverage above the BLAST threshold in the UniMag database (validated proteins from Magnoliophyta). Functional annotation published with the genome: Mitochondrial carrier protein, putative GO:0001953; biological_process; negative regulation of cell-matrix adhesion GO:0003676; molecular_function; nucleic acid binding GO:0003824; molecular_function; catalytic activity GO:0004528; molecular_function; phosphodiesterase I activity GO:0004551; molecular_function; nucleotide diphosphatase activity GO:0004622; molecular_function; lysophospholipase activity GO:0005044; molecular_function; scavenger receptor activity GO:0005509; molecular_function; calcium ion binding GO:0005576; cellular_component; extracellular region GO:0005615; cellular_component; extracellular space GO:0005737; cellular_component; cytoplasm GO:0005794; cellular_component; Golgi apparatus GO:0005887; cellular_component; integral component of plasma membrane GO:0006629; biological_process; lipid metabolic process GO:0006644; biological_process; phospholipid metabolic process GO:0006898; biological_process; receptor-mediated endocytosis GO:0006935; biological_process; chemotaxis GO:0006955; biological_process; immune response GO:0008152; biological_process; metabolic process GO:0008270; molecular_function; zinc ion binding GO:0008284; biological_process; positive regulation of cell population proliferation GO:0009395; biological_process; phospholipid catabolic process GO:0010634; biological_process; positive regulation of epithelial cell migration GO:0016042; biological_process; lipid catabolic process GO:0016787; molecular_function; hydrolase activity GO:0030247; molecular_function; polysaccharide binding GO:0030334; biological_process; regulation of cell migration GO:0034638; biological_process; phosphatidylcholine catabolic process GO:0045765; biological_process; regulation of angiogenesis GO:0046872; molecular_function; metal ion binding GO:0047391; molecular_function; alkylglycerophosphoethanolamine phosphodiesterase activity GO:0048714; biological_process; positive regulation of oligodendrocyte differentiation GO:0050731; biological_process; positive regulation of peptidyl-tyrosine phosphorylation GO:0051894; biological_process; positive regulation of focal adhesion assembly GO:0060326; biological_process; cell chemotaxis GO:0090305; biological_process; nucleic acid phosphodiester bond hydrolysis GO:1900026; biological_process; positive regulation of substrate adhesion-dependent cell spreading GO:2000394; biological_process; positive regulation of lamellipodium morphogenesis
Type	Genomic
Sequence	HORVU.MOREX.r2.3HG0205650.1
Source Species	Hordeum vulgare
Source Germplasm	Morex (barley)