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GrainGenes Probe Report: HORVU.MOREX.r2.3HG0208310

[Submit comment/correction][What is a probe?]Probes originated as records of the single stranded molecules used in RFLP mapping. This term has expanded to include PCR primers and SNPs.

Note: Probe report page includes probe information, gene models, PCR Primers, and SNPs.

Probe	HORVU.MOREX.r2.3HG0208310
Locus	HORVU.MOREX.r2.3HG0208310.1
URL	Gene Ontology GO:0004888 [ Show all 46 ]
Reference	Monat C et al. (2019) TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools Genome Biology 20:284.
General Remarks	[ Hide all but 1 of 48 ] Confidence level 1 = HC: High Confidence. Confidence level 2 = HC2: Complete protein with a BLAST hit in UniPoa (validated proteins from Poaceae), but no BLAST hit in UniMag (validated proteins from Magnoliophyta) or TREP (Triticeae REPetitive elements database). Functional annotation published with the genome: Polynucleotidyl transferase ribonuclease H-like superfamily protein GO:0004888; molecular_function; transmembrane signaling receptor activity GO:0005216; molecular_function; ion channel activity GO:0005230; molecular_function; extracellular ligand-gated ion channel activity GO:0005515; molecular_function; protein binding GO:0005737; cellular_component; cytoplasm GO:0005886; cellular_component; plasma membrane GO:0005892; cellular_component; acetylcholine-gated channel complex GO:0006811; biological_process; ion transport GO:0006816; biological_process; calcium ion transport GO:0007271; biological_process; synaptic transmission, cholinergic GO:0007613; biological_process; memory GO:0008144; molecular_function; drug binding GO:0008179; molecular_function; adenylate cyclase binding GO:0014069; cellular_component; postsynaptic density GO:0016020; cellular_component; membrane GO:0016021; cellular_component; integral component of membrane GO:0019228; biological_process; neuronal action potential GO:0019901; molecular_function; protein kinase binding GO:0022848; molecular_function; acetylcholine-gated cation-selective channel activity GO:0030054; cellular_component; cell junction GO:0030424; cellular_component; axon GO:0030425; cellular_component; dendrite GO:0030426; cellular_component; growth cone GO:0032279; cellular_component; asymmetric synapse GO:0034220; biological_process; ion transmembrane transport GO:0035094; biological_process; response to nicotine GO:0042166; molecular_function; acetylcholine binding GO:0042391; biological_process; regulation of membrane potential GO:0042416; biological_process; dopamine biosynthetic process GO:0042734; cellular_component; presynaptic membrane GO:0043025; cellular_component; neuronal cell body GO:0043197; cellular_component; dendritic spine GO:0043198; cellular_component; dendritic shaft GO:0044853; cellular_component; plasma membrane raft GO:0045121; cellular_component; membrane raft GO:0045202; cellular_component; synapse GO:0045211; cellular_component; postsynaptic membrane GO:0050893; biological_process; sensory processing GO:0051117; molecular_function; ATPase binding GO:0060078; biological_process; regulation of postsynaptic membrane potential GO:0060079; biological_process; excitatory postsynaptic potential GO:0070373; biological_process; negative regulation of ERK1 and ERK2 cascade GO:0070374; biological_process; positive regulation of ERK1 and ERK2 cascade GO:0095500; biological_process; acetylcholine receptor signaling pathway GO:0097110; molecular_function; scaffold protein binding GO:1905144; biological_process; response to acetylcholine
Type	Genomic
Sequence	HORVU.MOREX.r2.3HG0208310.1
Source Species	Hordeum vulgare
Source Germplasm	Morex (barley)