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GrainGenes Probe Report: HORVU.MOREX.r2.3HG0221460

[Submit comment/correction][What is a probe?]Probes originated as records of the single stranded molecules used in RFLP mapping. This term has expanded to include PCR primers and SNPs.

Note: Probe report page includes probe information, gene models, PCR Primers, and SNPs.

Probe	HORVU.MOREX.r2.3HG0221460
Locus	HORVU.MOREX.r2.3HG0221460.1
URL	Gene Ontology GO:0000075 [ Show all 32 ]
Reference	Monat C et al. (2019) TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools Genome Biology 20:284.
General Remarks	[ Hide all but 1 of 34 ] Confidence level 1 = HC: High Confidence. Confidence level 2 = HC2: Complete protein with a BLAST hit in UniPoa (validated proteins from Poaceae), but no BLAST hit in UniMag (validated proteins from Magnoliophyta) or TREP (Triticeae REPetitive elements database). Functional annotation published with the genome: Serine/threonine protein phosphatase 7 long form isogeny GO:0000075; biological_process; cell cycle checkpoint GO:0000723; biological_process; telomere maintenance GO:0000781; cellular_component; chromosome, telomeric region GO:0000784; cellular_component; nuclear chromosome, telomeric region GO:0003684; molecular_function; damaged DNA binding GO:0004518; molecular_function; nuclease activity GO:0004527; molecular_function; exonuclease activity GO:0005515; molecular_function; protein binding GO:0005634; cellular_component; nucleus GO:0005654; cellular_component; nucleoplasm GO:0005694; cellular_component; chromosome GO:0005737; cellular_component; cytoplasm GO:0005813; cellular_component; centrosome GO:0005815; cellular_component; microtubule organizing center GO:0005856; cellular_component; cytoskeleton GO:0006281; biological_process; DNA repair GO:0006289; biological_process; nucleotide-excision repair GO:0006303; biological_process; double-strand break repair via nonhomologous end joining GO:0006974; biological_process; cellular response to DNA damage stimulus GO:0008409; molecular_function; 5'-3' exonuclease activity GO:0010833; biological_process; telomere maintenance via telomere lengthening GO:0016233; biological_process; telomere capping GO:0016604; cellular_component; nuclear body GO:0016787; molecular_function; hydrolase activity GO:0031627; biological_process; telomeric loop formation GO:0031848; biological_process; protection from non-homologous end joining at telomere GO:0031860; biological_process; telomeric 3' overhang formation GO:0035312; molecular_function; 5'-3' exodeoxyribonuclease activity GO:0036297; biological_process; interstrand cross-link repair GO:0042803; molecular_function; protein homodimerization activity GO:0044877; molecular_function; protein-containing complex binding GO:0090305; biological_process; nucleic acid phosphodiester bond hydrolysis
Type	Genomic
Sequence	HORVU.MOREX.r2.3HG0221460.1
Source Species	Hordeum vulgare
Source Germplasm	Morex (barley)