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GrainGenes Probe Report: HORVU.MOREX.r2.3HG0250360

[Submit comment/correction][What is a probe?]Probes originated as records of the single stranded molecules used in RFLP mapping. This term has expanded to include PCR primers and SNPs.

Note: Probe report page includes probe information, gene models, PCR Primers, and SNPs.

Probe	HORVU.MOREX.r2.3HG0250360
Locus	HORVU.MOREX.r2.3HG0250360.1
URL	Gene Ontology GO:0000122 [ Show all 21 ]
Reference	Monat C et al. (2019) TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools Genome Biology 20:284.
General Remarks	[ Hide all but 1 of 23 ] Confidence level 1 = HC: High Confidence. Confidence level 2 = HC2: Complete protein with a BLAST hit in UniPoa (validated proteins from Poaceae), but no BLAST hit in UniMag (validated proteins from Magnoliophyta) or TREP (Triticeae REPetitive elements database). Functional annotation published with the genome: Transposon Ty1-OR Gag-Pol polyprotein GO:0000122; biological_process; negative regulation of transcription by RNA polymerase II GO:0000775; cellular_component; chromosome, centromeric region GO:0000776; cellular_component; kinetochore GO:0000777; cellular_component; condensed chromosome kinetochore GO:0001227; molecular_function; DNA-binding transcription repressor activity, RNA polymerase II-specific GO:0003677; molecular_function; DNA binding GO:0005634; cellular_component; nucleus GO:0005654; cellular_component; nucleoplasm GO:0005694; cellular_component; chromosome GO:0005730; cellular_component; nucleolus GO:0006351; biological_process; transcription, DNA-templated GO:0006355; biological_process; regulation of transcription, DNA-templated GO:0015631; molecular_function; tubulin binding GO:0019899; molecular_function; enzyme binding GO:0042393; molecular_function; histone binding GO:0042826; molecular_function; histone deacetylase binding GO:0043021; molecular_function; ribonucleoprotein complex binding GO:0043565; molecular_function; sequence-specific DNA binding GO:0046872; molecular_function; metal ion binding GO:0051219; molecular_function; phosphoprotein binding GO:0097110; molecular_function; scaffold protein binding
Type	Genomic
Sequence	HORVU.MOREX.r2.3HG0250360.1
Source Species	Hordeum vulgare
Source Germplasm	Morex (barley)