Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Probe Report: HORVU.MOREX.r2.3HG0255360

[Submit comment/correction][What is a probe?]Probes originated as records of the single stranded molecules used in RFLP mapping. This term has expanded to include PCR primers and SNPs.

Note: Probe report page includes probe information, gene models, PCR Primers, and SNPs.

Probe	HORVU.MOREX.r2.3HG0255360
Locus	HORVU.MOREX.r2.3HG0255360.1
URL	Gene Ontology GO:0004553 [ Show all 17 ]
Reference	Monat C et al. (2019) TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools Genome Biology 20:284.
General Remarks	[ Hide all but 1 of 19 ] Confidence level 1 = HC: High Confidence. Confidence level 2 = HC1: Complete protein with subject and query coverage above the BLAST threshold in the UniMag database (validated proteins from Magnoliophyta). Functional annotation published with the genome: Pentatricopeptide repeat protein GO:0004553; molecular_function; hydrolase activity, hydrolyzing O-glycosyl compounds GO:0005829; cellular_component; cytosol GO:0005975; biological_process; carbohydrate metabolic process GO:0008152; biological_process; metabolic process GO:0008422; molecular_function; beta-glucosidase activity GO:0009617; biological_process; response to bacterium GO:0009866; biological_process; induced systemic resistance, ethylene mediated signaling pathway GO:0016787; molecular_function; hydrolase activity GO:0016798; molecular_function; hydrolase activity, acting on glycosyl bonds GO:0019748; biological_process; secondary metabolic process GO:0030245; biological_process; cellulose catabolic process GO:0031349; biological_process; positive regulation of defense response GO:0071281; biological_process; cellular response to iron ion GO:0071369; biological_process; cellular response to ethylene stimulus GO:0071732; biological_process; cellular response to nitric oxide GO:0102483; molecular_function; scopolin beta-glucosidase activity GO:1990641; biological_process; response to iron ion starvation
Type	Genomic
Sequence	HORVU.MOREX.r2.3HG0255360.1
Source Species	Hordeum vulgare
Source Germplasm	Morex (barley)