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GrainGenes Probe Report: HORVU.MOREX.r2.3HG0255520

[Submit comment/correction][What is a probe?]Probes originated as records of the single stranded molecules used in RFLP mapping. This term has expanded to include PCR primers and SNPs.

Note: Probe report page includes probe information, gene models, PCR Primers, and SNPs.

Probe	HORVU.MOREX.r2.3HG0255520
Locus	HORVU.MOREX.r2.3HG0255520.1
URL	Gene Ontology GO:0001523 [ Show all 20 ]
Reference	Monat C et al. (2019) TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools Genome Biology 20:284.
General Remarks	[ Hide all but 1 of 22 ] Confidence level 1 = HC: High Confidence. Confidence level 2 = HC2: Complete protein with a BLAST hit in UniPoa (validated proteins from Poaceae), but no BLAST hit in UniMag (validated proteins from Magnoliophyta) or TREP (Triticeae REPetitive elements database). Functional annotation published with the genome: RING/U-box superfamily protein GO:0001523; biological_process; retinoid metabolic process GO:0003016; biological_process; respiratory system process GO:0004022; molecular_function; alcohol dehydrogenase (NAD+) activity GO:0005504; molecular_function; fatty acid binding GO:0005737; cellular_component; cytoplasm GO:0005739; cellular_component; mitochondrion GO:0006069; biological_process; ethanol oxidation GO:0008270; molecular_function; zinc ion binding GO:0016491; molecular_function; oxidoreductase activity GO:0018119; biological_process; peptidyl-cysteine S-nitrosylation GO:0018467; molecular_function; formaldehyde dehydrogenase activity GO:0032496; biological_process; response to lipopolysaccharide GO:0042803; molecular_function; protein homodimerization activity GO:0045777; biological_process; positive regulation of blood pressure GO:0046294; biological_process; formaldehyde catabolic process GO:0046872; molecular_function; metal ion binding GO:0051409; biological_process; response to nitrosative stress GO:0051775; biological_process; response to redox state GO:0051903; molecular_function; S-(hydroxymethyl)glutathione dehydrogenase activity GO:0055114; biological_process; oxidation-reduction process
Type	Genomic
Sequence	HORVU.MOREX.r2.3HG0255520.1
Source Species	Hordeum vulgare
Source Germplasm	Morex (barley)