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GrainGenes Probe Report: HORVU.MOREX.r2.3HG0259400

[Submit comment/correction][What is a probe?]Probes originated as records of the single stranded molecules used in RFLP mapping. This term has expanded to include PCR primers and SNPs.

Note: Probe report page includes probe information, gene models, PCR Primers, and SNPs.

Probe	HORVU.MOREX.r2.3HG0259400
Locus	HORVU.MOREX.r2.3HG0259400.1
URL	Gene Ontology GO:0000086 [ Show all 43 ]
Reference	Monat C et al. (2019) TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools Genome Biology 20:284.
General Remarks	[ Hide all but 1 of 45 ] Confidence level 1 = HC: High Confidence. Confidence level 2 = HC2: Complete protein with a BLAST hit in UniPoa (validated proteins from Poaceae), but no BLAST hit in UniMag (validated proteins from Magnoliophyta) or TREP (Triticeae REPetitive elements database). Functional annotation published with the genome: Transposon protein, putative, Mutator sub-class GO:0000086; biological_process; G2/M transition of mitotic cell cycle GO:0000209; biological_process; protein polyubiquitination GO:0004842; molecular_function; ubiquitin-protein transferase activity GO:0005515; molecular_function; protein binding GO:0005634; cellular_component; nucleus GO:0005654; cellular_component; nucleoplasm GO:0005737; cellular_component; cytoplasm GO:0005829; cellular_component; cytosol GO:0006470; biological_process; protein dephosphorylation GO:0006511; biological_process; ubiquitin-dependent protein catabolic process GO:0007165; biological_process; signal transduction GO:0008013; molecular_function; beta-catenin binding GO:0016032; biological_process; viral process GO:0016055; biological_process; Wnt signaling pathway GO:0016567; biological_process; protein ubiquitination GO:0016874; molecular_function; ligase activity GO:0019005; cellular_component; SCF ubiquitin ligase complex GO:0030163; biological_process; protein catabolic process GO:0031146; biological_process; SCF-dependent proteasomal ubiquitin-dependent protein catabolic process GO:0031648; biological_process; protein destabilization GO:0033598; biological_process; mammary gland epithelial cell proliferation GO:0038061; biological_process; NIK/NF-kappaB signaling GO:0042752; biological_process; regulation of circadian rhythm GO:0042753; biological_process; positive regulation of circadian rhythm GO:0043122; biological_process; regulation of I-kappaB kinase/NF-kappaB signaling GO:0043161; biological_process; proteasome-mediated ubiquitin-dependent protein catabolic process GO:0043433; biological_process; negative regulation of DNA-binding transcription factor activity GO:0043687; biological_process; post-translational protein modification GO:0045309; molecular_function; protein phosphorylated amino acid binding GO:0045862; biological_process; positive regulation of proteolysis GO:0045879; biological_process; negative regulation of smoothened signaling pathway GO:0045892; biological_process; negative regulation of transcription, DNA-templated GO:0045893; biological_process; positive regulation of transcription, DNA-templated GO:0046983; molecular_function; protein dimerization activity GO:0048511; biological_process; rhythmic process GO:0051403; biological_process; stress-activated MAPK cascade GO:0051726; biological_process; regulation of cell cycle GO:0060444; biological_process; branching involved in mammary gland duct morphogenesis GO:0060828; biological_process; regulation of canonical Wnt signaling pathway GO:0061136; biological_process; regulation of proteasomal protein catabolic process GO:0061630; molecular_function; ubiquitin protein ligase activity GO:0070498; biological_process; interleukin-1-mediated signaling pathway GO:0071407; biological_process; cellular response to organic cyclic compound
Type	Genomic
Sequence	HORVU.MOREX.r2.3HG0259400.1
Source Species	Hordeum vulgare
Source Germplasm	Morex (barley)