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GrainGenes Probe Report: HORVU.MOREX.r2.4HG0292130

[Submit comment/correction][What is a probe?]Probes originated as records of the single stranded molecules used in RFLP mapping. This term has expanded to include PCR primers and SNPs.

Note: Probe report page includes probe information, gene models, PCR Primers, and SNPs.

Probe	HORVU.MOREX.r2.4HG0292130
Locus	HORVU.MOREX.r2.4HG0292130.1
URL	Gene Ontology GO:0001666 [ Show all 32 ]
Reference	Monat C et al. (2019) TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools Genome Biology 20:284.
General Remarks	[ Hide all but 1 of 34 ] Confidence level 1 = HC: High Confidence. Confidence level 2 = HC2: Complete protein with a BLAST hit in UniPoa (validated proteins from Poaceae), but no BLAST hit in UniMag (validated proteins from Magnoliophyta) or TREP (Triticeae REPetitive elements database). Functional annotation published with the genome: DUF241 domain protein, putative (DUF241) GO:0001666; biological_process; response to hypoxia GO:0005509; molecular_function; calcium ion binding GO:0005634; cellular_component; nucleus GO:0005905; cellular_component; clathrin-coated pit GO:0006629; biological_process; lipid metabolic process GO:0006869; biological_process; lipid transport GO:0006897; biological_process; endocytosis GO:0006898; biological_process; receptor-mediated endocytosis GO:0007166; biological_process; cell surface receptor signaling pathway GO:0007507; biological_process; heart development GO:0007584; biological_process; response to nutrient GO:0008202; biological_process; steroid metabolic process GO:0008203; biological_process; cholesterol metabolic process GO:0009725; biological_process; response to hormone GO:0009986; cellular_component; cell surface GO:0016020; cellular_component; membrane GO:0016021; cellular_component; integral component of membrane GO:0021987; biological_process; cerebral cortex development GO:0030229; molecular_function; very-low-density lipoprotein particle receptor activity GO:0030296; molecular_function; protein tyrosine kinase activator activity GO:0032496; biological_process; response to lipopolysaccharide GO:0032869; biological_process; cellular response to insulin stimulus GO:0034361; cellular_component; very-low-density lipoprotein particle GO:0034447; biological_process; very-low-density lipoprotein particle clearance GO:0042149; biological_process; cellular response to glucose starvation GO:0042493; biological_process; response to drug GO:0045177; cellular_component; apical part of cell GO:0048471; cellular_component; perinuclear region of cytoplasm GO:0061098; biological_process; positive regulation of protein tyrosine kinase activity GO:0071222; biological_process; cellular response to lipopolysaccharide GO:0071347; biological_process; cellular response to interleukin-1 GO:0071456; biological_process; cellular response to hypoxia
Type	Genomic
Sequence	HORVU.MOREX.r2.4HG0292130.1
Source Species	Hordeum vulgare
Source Germplasm	Morex (barley)