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GrainGenes Probe Report: HORVU.MOREX.r2.5HG0353940

[Submit comment/correction][What is a probe?]Probes originated as records of the single stranded molecules used in RFLP mapping. This term has expanded to include PCR primers and SNPs.

Note: Probe report page includes probe information, gene models, PCR Primers, and SNPs.

Probe	HORVU.MOREX.r2.5HG0353940
Locus	HORVU.MOREX.r2.5HG0353940.1
URL	Gene Ontology GO:0005125 [ Show all 20 ]
Reference	Monat C et al. (2019) TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools Genome Biology 20:284.
General Remarks	[ Hide all but 1 of 22 ] Confidence level 1 = HC: High Confidence. Confidence level 2 = HC1: Complete protein with subject and query coverage above the BLAST threshold in the UniMag database (validated proteins from Magnoliophyta). Functional annotation published with the genome: RING/U-box superfamily protein GO:0005125; molecular_function; cytokine activity GO:0005164; molecular_function; tumor necrosis factor receptor binding GO:0005174; molecular_function; CD40 receptor binding GO:0005576; cellular_component; extracellular region GO:0005615; cellular_component; extracellular space GO:0005622; cellular_component; intracellular GO:0005886; cellular_component; plasma membrane GO:0006954; biological_process; inflammatory response GO:0006955; biological_process; immune response GO:0007257; biological_process; activation of JUN kinase activity GO:0009986; cellular_component; cell surface GO:0010469; biological_process; regulation of signaling receptor activity GO:0016020; cellular_component; membrane GO:0016021; cellular_component; integral component of membrane GO:0030168; biological_process; platelet activation GO:0032733; biological_process; positive regulation of interleukin-10 production GO:0032753; biological_process; positive regulation of interleukin-4 production GO:0042100; biological_process; B cell proliferation GO:0042102; biological_process; positive regulation of T cell proliferation GO:0051092; biological_process; positive regulation of NF-kappaB transcription factor activity
Type	Genomic
Sequence	HORVU.MOREX.r2.5HG0353940.1
Source Species	Hordeum vulgare
Source Germplasm	Morex (barley)