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GrainGenes Probe Report: HORVU.MOREX.r2.5HG0361580

[Submit comment/correction][What is a probe?]Probes originated as records of the single stranded molecules used in RFLP mapping. This term has expanded to include PCR primers and SNPs.

Note: Probe report page includes probe information, gene models, PCR Primers, and SNPs.

Probe	HORVU.MOREX.r2.5HG0361580
Locus	HORVU.MOREX.r2.5HG0361580.1
URL	Gene Ontology GO:0001077 [ Show all 18 ]
Reference	Monat C et al. (2019) TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools Genome Biology 20:284.
General Remarks	[ Hide all but 1 of 21 ] Confidence level 1 = HC: High Confidence. Confidence level 2 = HC1: Complete protein with subject and query coverage above the BLAST threshold in the UniMag database (validated proteins from Magnoliophyta). Functional annotation published with the genome: RING/U-box superfamily protein The GO term GO:0001077 was intially assigned to this transcript and is now obsolete. It has been replaced by: GO:0001228 The GO term GO:0001078 was intially assigned to this transcript and is now obsolete. It has been replaced by: GO:0001227 GO:0000122; biological_process; negative regulation of transcription by RNA polymerase II GO:0000978; molecular_function; RNA polymerase II cis-regulatory region sequence-specific DNA binding GO:0000981; molecular_function; DNA-binding transcription factor activity, RNA polymerase II-specific GO:0001191; molecular_function; obsolete transcriptional repressor activity, RNA polymerase II transcription factor binding GO:0003677; molecular_function; DNA binding GO:0005634; cellular_component; nucleus GO:0005737; cellular_component; cytoplasm GO:0006006; biological_process; glucose metabolic process GO:0006351; biological_process; transcription, DNA-templated GO:0006355; biological_process; regulation of transcription, DNA-templated GO:0006366; biological_process; transcription by RNA polymerase II GO:0008270; molecular_function; zinc ion binding GO:0045944; biological_process; positive regulation of transcription by RNA polymerase II GO:0046324; biological_process; regulation of glucose import GO:0046872; molecular_function; metal ion binding GO:0061414; biological_process; positive regulation of transcription from RNA polymerase II promoter by a nonfermentable carbon source
Type	Genomic
Sequence	HORVU.MOREX.r2.5HG0361580.1
Source Species	Hordeum vulgare
Source Germplasm	Morex (barley)