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GrainGenes Probe Report: HORVU.MOREX.r2.5HG0377790

[Submit comment/correction][What is a probe?]Probes originated as records of the single stranded molecules used in RFLP mapping. This term has expanded to include PCR primers and SNPs.

Note: Probe report page includes probe information, gene models, PCR Primers, and SNPs.

Probe	HORVU.MOREX.r2.5HG0377790
Locus	HORVU.MOREX.r2.5HG0377790.1
URL	Gene Ontology GO:0004407 [ Show all 17 ]
Reference	Monat C et al. (2019) TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools Genome Biology 20:284.
General Remarks	[ Hide all but 1 of 19 ] Confidence level 1 = HC: High Confidence. Confidence level 2 = HC2: Complete protein with a BLAST hit in UniPoa (validated proteins from Poaceae), but no BLAST hit in UniMag (validated proteins from Magnoliophyta) or TREP (Triticeae REPetitive elements database). Functional annotation published with the genome: Arginine--tRNA ligase, cytoplasmic GO:0004407; molecular_function; histone deacetylase activity GO:0005634; cellular_component; nucleus GO:0005829; cellular_component; cytosol GO:0006325; biological_process; chromatin organization GO:0006351; biological_process; transcription, DNA-templated GO:0006355; biological_process; regulation of transcription, DNA-templated GO:0009507; cellular_component; chloroplast GO:0016575; biological_process; histone deacetylation GO:0016787; molecular_function; hydrolase activity GO:0032041; molecular_function; NAD-dependent histone deacetylase activity (H3-K14 specific) GO:0042903; molecular_function; tubulin deacetylase activity GO:0043014; molecular_function; alpha-tubulin binding GO:0043621; molecular_function; protein self-association GO:0048487; molecular_function; beta-tubulin binding GO:0051721; molecular_function; protein phosphatase 2A binding GO:0070932; biological_process; histone H3 deacetylation GO:0090042; biological_process; tubulin deacetylation
Type	Genomic
Sequence	HORVU.MOREX.r2.5HG0377790.1
Source Species	Hordeum vulgare
Source Germplasm	Morex (barley)