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GrainGenes Probe Report: HORVU.MOREX.r2.5HG0395460

[Submit comment/correction][What is a probe?]Probes originated as records of the single stranded molecules used in RFLP mapping. This term has expanded to include PCR primers and SNPs.

Note: Probe report page includes probe information, gene models, PCR Primers, and SNPs.

Probe	HORVU.MOREX.r2.5HG0395460
Locus	HORVU.MOREX.r2.5HG0395460.1
URL	Gene Ontology GO:0001105 [ Show all 28 ]
Reference	Monat C et al. (2019) TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools Genome Biology 20:284.
General Remarks	[ Hide all but 1 of 31 ] Confidence level 1 = HC: High Confidence. Confidence level 2 = HC1: Complete protein with subject and query coverage above the BLAST threshold in the UniMag database (validated proteins from Magnoliophyta). Functional annotation published with the genome: Trichome birefringence-like protein GO:0003713; molecular_function; transcription coactivator activity The GO term GO:0001105 was intially assigned to this transcript and is now obsolete. It has been replaced by: GO:0003713 GO:0003677; molecular_function; DNA binding GO:0004842; molecular_function; ubiquitin-protein transferase activity GO:0005634; cellular_component; nucleus GO:0005694; cellular_component; chromosome GO:0005737; cellular_component; cytoplasm GO:0006281; biological_process; DNA repair GO:0006310; biological_process; DNA recombination GO:0006351; biological_process; transcription, DNA-templated GO:0006355; biological_process; regulation of transcription, DNA-templated GO:0006357; biological_process; regulation of transcription by RNA polymerase II GO:0006366; biological_process; transcription by RNA polymerase II GO:0006629; biological_process; lipid metabolic process GO:0006631; biological_process; fatty acid metabolic process GO:0006633; biological_process; fatty acid biosynthetic process GO:0006974; biological_process; cellular response to DNA damage stimulus GO:0007049; biological_process; cell cycle GO:0008270; molecular_function; zinc ion binding GO:0016567; biological_process; protein ubiquitination GO:0016740; molecular_function; transferase activity GO:0031436; cellular_component; BRCA1-BARD1 complex GO:0045717; biological_process; negative regulation of fatty acid biosynthetic process GO:0045893; biological_process; positive regulation of transcription, DNA-templated GO:0045944; biological_process; positive regulation of transcription by RNA polymerase II GO:0046872; molecular_function; metal ion binding GO:0051865; biological_process; protein autoubiquitination GO:0070063; molecular_function; RNA polymerase binding GO:0085020; biological_process; protein K6-linked ubiquitination
Type	Genomic
Sequence	HORVU.MOREX.r2.5HG0395460.1
Source Species	Hordeum vulgare
Source Germplasm	Morex (barley)