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GrainGenes Probe Report: HORVU.MOREX.r2.5HG0403140

[Submit comment/correction][What is a probe?]Probes originated as records of the single stranded molecules used in RFLP mapping. This term has expanded to include PCR primers and SNPs.

Note: Probe report page includes probe information, gene models, PCR Primers, and SNPs.

Probe	HORVU.MOREX.r2.5HG0403140
Locus	HORVU.MOREX.r2.5HG0403140.1
URL	Gene Ontology GO:0000166 [ Show all 20 ]
Reference	Monat C et al. (2019) TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools Genome Biology 20:284.
General Remarks	[ Hide all but 1 of 22 ] Confidence level 1 = HC: High Confidence. Confidence level 2 = HC2: Complete protein with a BLAST hit in UniPoa (validated proteins from Poaceae), but no BLAST hit in UniMag (validated proteins from Magnoliophyta) or TREP (Triticeae REPetitive elements database). Functional annotation published with the genome: 50S ribosomal protein L4 GO:0000166; molecular_function; nucleotide binding GO:0004115; molecular_function; 3', 5'-cyclic-AMP phosphodiesterase activity GO:0005506; molecular_function; iron ion binding GO:0005515; molecular_function; protein binding GO:0005576; cellular_component; extracellular region GO:0005618; cellular_component; cell wall GO:0005737; cellular_component; cytoplasm GO:0005886; cellular_component; plasma membrane GO:0006198; biological_process; cAMP catabolic process GO:0008199; molecular_function; ferric iron binding GO:0008663; molecular_function; 2', 3'-cyclic-nucleotide 2'-phosphodiesterase activity GO:0009405; biological_process; pathogenesis GO:0016020; cellular_component; membrane GO:0016311; biological_process; dephosphorylation GO:0016787; molecular_function; hydrolase activity GO:0016791; molecular_function; phosphatase activity GO:0030145; molecular_function; manganese ion binding GO:0042301; molecular_function; phosphate ion binding GO:0042545; biological_process; cell wall modification GO:0046872; molecular_function; metal ion binding
Type	Genomic
Sequence	HORVU.MOREX.r2.5HG0403140.1
Source Species	Hordeum vulgare
Source Germplasm	Morex (barley)