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GrainGenes Probe Report: HORVU.MOREX.r2.5HG0408340

[Submit comment/correction][What is a probe?]Probes originated as records of the single stranded molecules used in RFLP mapping. This term has expanded to include PCR primers and SNPs.

Note: Probe report page includes probe information, gene models, PCR Primers, and SNPs.

Probe	HORVU.MOREX.r2.5HG0408340
Locus	HORVU.MOREX.r2.5HG0408340.1
URL	Gene Ontology GO:0002331 [ Show all 24 ]
Reference	Monat C et al. (2019) TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools Genome Biology 20:284.
General Remarks	[ Hide all but 1 of 26 ] Confidence level 1 = HC: High Confidence. Confidence level 2 = HC2: Complete protein with a BLAST hit in UniPoa (validated proteins from Poaceae), but no BLAST hit in UniMag (validated proteins from Magnoliophyta) or TREP (Triticeae REPetitive elements database). Functional annotation published with the genome: WD-repeat protein GO:0002331; biological_process; pre-B cell allelic exclusion GO:0003677; molecular_function; DNA binding GO:0003824; molecular_function; catalytic activity GO:0004518; molecular_function; nuclease activity GO:0004519; molecular_function; endonuclease activity GO:0004842; molecular_function; ubiquitin-protein transferase activity GO:0005634; cellular_component; nucleus GO:0006310; biological_process; DNA recombination GO:0006325; biological_process; chromatin organization GO:0008152; biological_process; metabolic process GO:0008270; molecular_function; zinc ion binding GO:0010390; biological_process; histone monoubiquitination GO:0016740; molecular_function; transferase activity GO:0016787; molecular_function; hydrolase activity GO:0030183; biological_process; B cell differentiation GO:0033077; biological_process; T cell differentiation in thymus GO:0033151; biological_process; V(D)J recombination GO:0042393; molecular_function; histone binding GO:0042803; molecular_function; protein homodimerization activity GO:0043565; molecular_function; sequence-specific DNA binding GO:0046872; molecular_function; metal ion binding GO:0051865; biological_process; protein autoubiquitination GO:0061630; molecular_function; ubiquitin protein ligase activity GO:0090305; biological_process; nucleic acid phosphodiester bond hydrolysis
Type	Genomic
Sequence	HORVU.MOREX.r2.5HG0408340.1
Source Species	Hordeum vulgare
Source Germplasm	Morex (barley)