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GrainGenes Probe Report: HORVU.MOREX.r2.5HG0408860

[What is a probe?]Probes originated as records of the single stranded molecules used in RFLP mapping. This term has expanded to include PCR primers and SNPs.

Note: Probe report page includes probe information, gene models, PCR Primers, and SNPs.

Probe	HORVU.MOREX.r2.5HG0408860
Locus	HORVU.MOREX.r2.5HG0408860.1
URL	Gene Ontology GO:0004888 [ Show all 21 ]
Reference	Monat C et al. (2019) TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools Genome Biology 20:284.
General Remarks	[ Hide all but 1 of 23 ] Confidence level 1 = HC: High Confidence. Confidence level 2 = HC2: Complete protein with a BLAST hit in UniPoa (validated proteins from Poaceae), but no BLAST hit in UniMag (validated proteins from Magnoliophyta) or TREP (Triticeae REPetitive elements database). Functional annotation published with the genome: Carbonic anhydrase GO:0004888; molecular_function; transmembrane signaling receptor activity GO:0004890; molecular_function; GABA-A receptor activity GO:0005216; molecular_function; ion channel activity GO:0005230; molecular_function; extracellular ligand-gated ion channel activity GO:0005237; molecular_function; inhibitory extracellular ligand-gated ion channel activity GO:0005254; molecular_function; chloride channel activity GO:0005886; cellular_component; plasma membrane GO:0006811; biological_process; ion transport GO:0006821; biological_process; chloride transport GO:0007214; biological_process; gamma-aminobutyric acid signaling pathway GO:0007601; biological_process; visual perception GO:0016020; cellular_component; membrane GO:0016021; cellular_component; integral component of membrane GO:0019904; molecular_function; protein domain specific binding GO:0030054; cellular_component; cell junction GO:0034220; biological_process; ion transmembrane transport GO:0034707; cellular_component; chloride channel complex GO:0045202; cellular_component; synapse GO:0045211; cellular_component; postsynaptic membrane GO:1902476; biological_process; chloride transmembrane transport GO:1902711; cellular_component; GABA-A receptor complex
Type	Genomic
Sequence	HORVU.MOREX.r2.5HG0408860.1
Source Species	Hordeum vulgare
Source Germplasm	Morex (barley)