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GrainGenes Probe Report: HORVU.MOREX.r2.5HG0411450

[Submit comment/correction][What is a probe?]Probes originated as records of the single stranded molecules used in RFLP mapping. This term has expanded to include PCR primers and SNPs.

Note: Probe report page includes probe information, gene models, PCR Primers, and SNPs.

Probe	HORVU.MOREX.r2.5HG0411450
Locus	HORVU.MOREX.r2.5HG0411450.1
URL	Gene Ontology GO:0000045 [ Show all 20 ]
Reference	Monat C et al. (2019) TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools Genome Biology 20:284.
General Remarks	[ Hide all but 1 of 22 ] Confidence level 1 = HC: High Confidence. Confidence level 2 = HC2: Complete protein with a BLAST hit in UniPoa (validated proteins from Poaceae), but no BLAST hit in UniMag (validated proteins from Magnoliophyta) or TREP (Triticeae REPetitive elements database). Functional annotation published with the genome: AP2-like ethylene-responsive transcription factor GO:0000045; biological_process; autophagosome assembly GO:0000153; cellular_component; cytoplasmic ubiquitin ligase complex GO:0000422; biological_process; autophagy of mitochondrion GO:0003674; molecular_function; molecular_function GO:0005737; cellular_component; cytoplasm GO:0005829; cellular_component; cytosol GO:0006464; biological_process; cellular protein modification process GO:0006914; biological_process; autophagy GO:0015031; biological_process; protein transport GO:0016236; biological_process; macroautophagy GO:0016567; biological_process; protein ubiquitination GO:0016740; molecular_function; transferase activity GO:0019776; molecular_function; Atg8 ligase activity GO:0019777; molecular_function; Atg12 transferase activity GO:0019787; molecular_function; ubiquitin-like protein transferase activity GO:0019899; molecular_function; enzyme binding GO:0043653; biological_process; mitochondrial fragmentation involved in apoptotic process GO:0044804; biological_process; autophagy of nucleus GO:0050765; biological_process; negative regulation of phagocytosis GO:1902017; biological_process; regulation of cilium assembly
Type	Genomic
Sequence	HORVU.MOREX.r2.5HG0411450.1
Source Species	Hordeum vulgare
Source Germplasm	Morex (barley)