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GrainGenes Probe Report: HORVU.MOREX.r2.5HG0425130

[Submit comment/correction][What is a probe?]Probes originated as records of the single stranded molecules used in RFLP mapping. This term has expanded to include PCR primers and SNPs.

Note: Probe report page includes probe information, gene models, PCR Primers, and SNPs.

Probe	HORVU.MOREX.r2.5HG0425130
Locus	HORVU.MOREX.r2.5HG0425130.1
URL	Gene Ontology GO:0004645 [ Show all 12 ]
Reference	Monat C et al. (2019) TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools Genome Biology 20:284.
General Remarks	[ Hide all but 1 of 14 ] Confidence level 1 = HC: High Confidence. Confidence level 2 = HC2: Complete protein with a BLAST hit in UniPoa (validated proteins from Poaceae), but no BLAST hit in UniMag (validated proteins from Magnoliophyta) or TREP (Triticeae REPetitive elements database). Functional annotation published with the genome: Retrotransposon protein, putative, unclassified GO:0004645; molecular_function; 1, 4-alpha-oligoglucan phosphorylase activity GO:0005975; biological_process; carbohydrate metabolic process GO:0008184; molecular_function; glycogen phosphorylase activity GO:0009266; biological_process; response to temperature stimulus GO:0009414; biological_process; response to water deprivation GO:0009507; cellular_component; chloroplast GO:0009570; cellular_component; chloroplast stroma GO:0016740; molecular_function; transferase activity GO:0016757; molecular_function; transferase activity, transferring glycosyl groups GO:0030170; molecular_function; pyridoxal phosphate binding GO:0102250; molecular_function; linear malto-oligosaccharide phosphorylase activity GO:0102499; molecular_function; SHG alpha-glucan phosphorylase activity
Type	Genomic
Sequence	HORVU.MOREX.r2.5HG0425130.1
Source Species	Hordeum vulgare
Source Germplasm	Morex (barley)