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GrainGenes Probe Report: HORVU.MOREX.r2.5HG0431000

[Submit comment/correction][What is a probe?]Probes originated as records of the single stranded molecules used in RFLP mapping. This term has expanded to include PCR primers and SNPs.

Note: Probe report page includes probe information, gene models, PCR Primers, and SNPs.

Probe	HORVU.MOREX.r2.5HG0431000
Locus	HORVU.MOREX.r2.5HG0431000.1
URL	Gene Ontology GO:0000139 [ Show all 26 ]
Reference	Monat C et al. (2019) TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools Genome Biology 20:284.
General Remarks	[ Hide all but 1 of 28 ] Confidence level 1 = HC: High Confidence. Confidence level 2 = HC2: Complete protein with a BLAST hit in UniPoa (validated proteins from Poaceae), but no BLAST hit in UniMag (validated proteins from Magnoliophyta) or TREP (Triticeae REPetitive elements database). Functional annotation published with the genome: RNA-directed DNA polymerase (Reverse transcriptase) GO:0000139; cellular_component; Golgi membrane GO:0001666; biological_process; response to hypoxia GO:0005515; molecular_function; protein binding GO:0005783; cellular_component; endoplasmic reticulum GO:0005789; cellular_component; endoplasmic reticulum membrane GO:0005794; cellular_component; Golgi apparatus GO:0006629; biological_process; lipid metabolic process GO:0007568; biological_process; aging GO:0008202; biological_process; steroid metabolic process GO:0008203; biological_process; cholesterol metabolic process GO:0012507; cellular_component; ER to Golgi transport vesicle membrane GO:0015485; molecular_function; cholesterol binding GO:0016020; cellular_component; membrane GO:0016021; cellular_component; integral component of membrane GO:0019217; biological_process; regulation of fatty acid metabolic process GO:0031410; cellular_component; cytoplasmic vesicle GO:0032868; biological_process; response to insulin GO:0032933; biological_process; SREBP signaling pathway GO:0032991; cellular_component; protein-containing complex GO:0042304; biological_process; regulation of fatty acid biosynthetic process GO:0043231; cellular_component; intracellular membrane-bounded organelle GO:0044877; molecular_function; protein-containing complex binding GO:0045540; biological_process; regulation of cholesterol biosynthetic process GO:0045541; biological_process; negative regulation of cholesterol biosynthetic process GO:0045716; biological_process; positive regulation of low-density lipoprotein particle receptor biosynthetic process GO:0051082; molecular_function; unfolded protein binding
Type	Genomic
Sequence	HORVU.MOREX.r2.5HG0431000.1
Source Species	Hordeum vulgare
Source Germplasm	Morex (barley)