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GrainGenes Probe Report: HORVU.MOREX.r2.6HG0461740

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Note: Probe report page includes probe information, gene models, PCR Primers, and SNPs.


Probe
HORVU.MOREX.r2.6HG0461740
Locus
HORVU.MOREX.r2.6HG0461740.1
URL
Gene Ontology GO:0017127
[ Show all 71 ]
Reference
ReferenceMonat C et al. (2019) TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools Genome Biology 20:284.
General Remarks
[ Hide all but 1 of 74 ]
Confidence level 1 = HC: High Confidence. Confidence level 2 = HC2: Complete protein with a BLAST hit in UniPoa (validated proteins from Poaceae), but no BLAST hit in UniMag (validated proteins from Magnoliophyta) or TREP (Triticeae REPetitive elements database).
Functional annotation published with the genome: 5'-AMP-activated protein kinase subunit beta-1
GO:0120020; molecular_function; cholesterol transfer activity
The GO term GO:0017127 was intially assigned to this transcript and is now obsolete. It has been replaced by: GO:0120020
GO:0001540; molecular_function; amyloid-beta binding
GO:0001932; biological_process; regulation of protein phosphorylation
GO:0001935; biological_process; endothelial cell proliferation
GO:0002740; biological_process; negative regulation of cytokine secretion involved in immune response
GO:0005319; molecular_function; lipid transporter activity
GO:0005543; molecular_function; phospholipid binding
GO:0005576; cellular_component; extracellular region
GO:0005615; cellular_component; extracellular space
GO:0006629; biological_process; lipid metabolic process
GO:0006644; biological_process; phospholipid metabolic process
GO:0006656; biological_process; phosphatidylcholine biosynthetic process
GO:0006695; biological_process; cholesterol biosynthetic process
GO:0006869; biological_process; lipid transport
GO:0007186; biological_process; G protein-coupled receptor signaling pathway
GO:0007229; biological_process; integrin-mediated signaling pathway
GO:0008035; molecular_function; high-density lipoprotein particle binding
GO:0008202; biological_process; steroid metabolic process
GO:0008203; biological_process; cholesterol metabolic process
GO:0008211; biological_process; glucocorticoid metabolic process
GO:0008289; molecular_function; lipid binding
GO:0010804; biological_process; negative regulation of tumor necrosis factor-mediated signaling pathway
GO:0010873; biological_process; positive regulation of cholesterol esterification
GO:0010903; biological_process; negative regulation of very-low-density lipoprotein particle remodeling
GO:0015485; molecular_function; cholesterol binding
GO:0018158; biological_process; protein oxidation
GO:0018206; biological_process; peptidyl-methionine modification
GO:0019899; molecular_function; enzyme binding
GO:0019915; biological_process; lipid storage
GO:0030139; cellular_component; endocytic vesicle
GO:0030300; biological_process; regulation of intestinal cholesterol absorption
GO:0030301; biological_process; cholesterol transport
GO:0030325; biological_process; adrenal gland development
GO:0031072; molecular_function; heat shock protein binding
GO:0031410; cellular_component; cytoplasmic vesicle
GO:0032489; biological_process; regulation of Cdc42 protein signal transduction
GO:0033344; biological_process; cholesterol efflux
GO:0033700; biological_process; phospholipid efflux
GO:0034115; biological_process; negative regulation of heterotypic cell-cell adhesion
GO:0034190; molecular_function; apolipoprotein receptor binding
GO:0034191; molecular_function; apolipoprotein A-I receptor binding
GO:0034361; cellular_component; very-low-density lipoprotein particle
GO:0034364; cellular_component; high-density lipoprotein particle
GO:0034366; cellular_component; spherical high-density lipoprotein particle
GO:0034375; biological_process; high-density lipoprotein particle remodeling
GO:0034380; biological_process; high-density lipoprotein particle assembly
GO:0035025; biological_process; positive regulation of Rho protein signal transduction
GO:0042157; biological_process; lipoprotein metabolic process
GO:0042158; biological_process; lipoprotein biosynthetic process
GO:0042632; biological_process; cholesterol homeostasis
GO:0042802; molecular_function; identical protein binding
GO:0043534; biological_process; blood vessel endothelial cell migration
GO:0043691; biological_process; reverse cholesterol transport
GO:0045499; molecular_function; chemorepellent activity
GO:0050713; biological_process; negative regulation of interleukin-1 beta secretion
GO:0050728; biological_process; negative regulation of inflammatory response
GO:0050821; biological_process; protein stabilization
GO:0050919; biological_process; negative chemotaxis
GO:0051180; biological_process; vitamin transport
GO:0051345; biological_process; positive regulation of hydrolase activity
GO:0051346; biological_process; negative regulation of hydrolase activity
GO:0051496; biological_process; positive regulation of stress fiber assembly
GO:0055091; biological_process; phospholipid homeostasis
GO:0060228; molecular_function; phosphatidylcholine-sterol O-acyltransferase activator activity
GO:0060354; biological_process; negative regulation of cell adhesion molecule production
GO:0060761; biological_process; negative regulation of response to cytokine stimulus
GO:0070328; biological_process; triglyceride homeostasis
GO:0070508; biological_process; cholesterol import
GO:0070653; molecular_function; high-density lipoprotein particle receptor binding
GO:0071813; molecular_function; lipoprotein particle binding
GO:1900026; biological_process; positive regulation of substrate adhesion-dependent cell spreading
Type
Genomic
Sequence
HORVU.MOREX.r2.6HG0461740.1
Source Species
Hordeum vulgare
Source Germplasm
Morex (barley)