Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Probe Report: HORVU.MOREX.r2.6HG0462390

[Submit comment/correction][What is a probe?]Probes originated as records of the single stranded molecules used in RFLP mapping. This term has expanded to include PCR primers and SNPs.

Note: Probe report page includes probe information, gene models, PCR Primers, and SNPs.

Probe	HORVU.MOREX.r2.6HG0462390
Locus	HORVU.MOREX.r2.6HG0462390.1
URL	Gene Ontology GO:0001505 [ Show all 31 ]
Reference	Monat C et al. (2019) TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools Genome Biology 20:284.
General Remarks	[ Hide all but 1 of 33 ] Confidence level 1 = HC: High Confidence. Confidence level 2 = HC2: Complete protein with a BLAST hit in UniPoa (validated proteins from Poaceae), but no BLAST hit in UniMag (validated proteins from Magnoliophyta) or TREP (Triticeae REPetitive elements database). Functional annotation published with the genome: Transposon protein, putative, CACTA, En/Spm sub-class, expressed GO:0001505; biological_process; regulation of neurotransmitter levels GO:0004888; molecular_function; transmembrane signaling receptor activity GO:0004890; molecular_function; GABA-A receptor activity GO:0005216; molecular_function; ion channel activity GO:0005230; molecular_function; extracellular ligand-gated ion channel activity GO:0005254; molecular_function; chloride channel activity GO:0005886; cellular_component; plasma membrane GO:0006811; biological_process; ion transport GO:0006821; biological_process; chloride transport GO:0006836; biological_process; neurotransmitter transport GO:0007214; biological_process; gamma-aminobutyric acid signaling pathway GO:0008503; molecular_function; benzodiazepine receptor activity GO:0016020; cellular_component; membrane GO:0016021; cellular_component; integral component of membrane GO:0022851; molecular_function; GABA-gated chloride ion channel activity GO:0030054; cellular_component; cell junction GO:0030285; cellular_component; integral component of synaptic vesicle membrane GO:0030424; cellular_component; axon GO:0030425; cellular_component; dendrite GO:0030659; cellular_component; cytoplasmic vesicle membrane GO:0031410; cellular_component; cytoplasmic vesicle GO:0032590; cellular_component; dendrite membrane GO:0034220; biological_process; ion transmembrane transport GO:0034707; cellular_component; chloride channel complex GO:0043025; cellular_component; neuronal cell body GO:0045202; cellular_component; synapse GO:0045211; cellular_component; postsynaptic membrane GO:0060077; cellular_component; inhibitory synapse GO:0098794; cellular_component; postsynapse GO:1902476; biological_process; chloride transmembrane transport GO:1902711; cellular_component; GABA-A receptor complex
Type	Genomic
Sequence	HORVU.MOREX.r2.6HG0462390.1
Source Species	Hordeum vulgare
Source Germplasm	Morex (barley)