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GrainGenes Probe Report: HORVU.MOREX.r2.6HG0473120

[Submit comment/correction][What is a probe?]Probes originated as records of the single stranded molecules used in RFLP mapping. This term has expanded to include PCR primers and SNPs.

Note: Probe report page includes probe information, gene models, PCR Primers, and SNPs.

Probe	HORVU.MOREX.r2.6HG0473120
Locus	HORVU.MOREX.r2.6HG0473120.1
URL	Gene Ontology GO:0000122 [ Show all 72 ]
Reference	Monat C et al. (2019) TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools Genome Biology 20:284.
General Remarks	[ Hide all but 1 of 74 ] Confidence level 1 = HC: High Confidence. Confidence level 2 = HC2: Complete protein with a BLAST hit in UniPoa (validated proteins from Poaceae), but no BLAST hit in UniMag (validated proteins from Magnoliophyta) or TREP (Triticeae REPetitive elements database). Functional annotation published with the genome: DUF581 family protein GO:0000122; biological_process; negative regulation of transcription by RNA polymerase II GO:0000209; biological_process; protein polyubiquitination GO:0001503; biological_process; ossification GO:0001843; biological_process; neural tube closure GO:0002376; biological_process; immune system process GO:0002726; biological_process; positive regulation of T cell cytokine production GO:0004842; molecular_function; ubiquitin-protein transferase activity GO:0005164; molecular_function; tumor necrosis factor receptor binding GO:0005634; cellular_component; nucleus GO:0005737; cellular_component; cytoplasm GO:0005811; cellular_component; lipid droplet GO:0005829; cellular_component; cytosol GO:0005886; cellular_component; plasma membrane GO:0005938; cellular_component; cell cortex GO:0006955; biological_process; immune response GO:0006974; biological_process; cellular response to DNA damage stimulus GO:0007165; biological_process; signal transduction GO:0007249; biological_process; I-kappaB kinase/NF-kappaB signaling GO:0007250; biological_process; activation of NF-kappaB-inducing kinase activity GO:0007254; biological_process; JNK cascade GO:0008270; molecular_function; zinc ion binding GO:0009887; biological_process; animal organ morphogenesis GO:0009898; cellular_component; cytoplasmic side of plasma membrane GO:0016567; biological_process; protein ubiquitination GO:0016740; molecular_function; transferase activity GO:0019221; biological_process; cytokine-mediated signaling pathway GO:0019886; biological_process; antigen processing and presentation of exogenous peptide antigen via MHC class II GO:0019901; molecular_function; protein kinase binding GO:0030316; biological_process; osteoclast differentiation GO:0031435; molecular_function; mitogen-activated protein kinase kinase kinase binding GO:0031624; molecular_function; ubiquitin conjugating enzyme binding GO:0031625; molecular_function; ubiquitin protein ligase binding GO:0031666; biological_process; positive regulation of lipopolysaccharide-mediated signaling pathway GO:0031996; molecular_function; thioesterase binding GO:0032147; biological_process; activation of protein kinase activity GO:0032743; biological_process; positive regulation of interleukin-2 production GO:0032991; cellular_component; protein-containing complex GO:0035631; cellular_component; CD40 receptor complex GO:0042088; biological_process; T-helper 1 type immune response GO:0042102; biological_process; positive regulation of T cell proliferation GO:0042475; biological_process; odontogenesis of dentin-containing tooth GO:0042802; molecular_function; identical protein binding GO:0042826; molecular_function; histone deacetylase binding GO:0042981; biological_process; regulation of apoptotic process GO:0043011; biological_process; myeloid dendritic cell differentiation GO:0043122; biological_process; regulation of I-kappaB kinase/NF-kappaB signaling GO:0043123; biological_process; positive regulation of I-kappaB kinase/NF-kappaB signaling GO:0043422; molecular_function; protein kinase B binding GO:0043507; biological_process; positive regulation of JUN kinase activity GO:0045084; biological_process; positive regulation of interleukin-12 biosynthetic process GO:0045410; biological_process; positive regulation of interleukin-6 biosynthetic process GO:0045453; biological_process; bone resorption GO:0045672; biological_process; positive regulation of osteoclast differentiation GO:0045892; biological_process; negative regulation of transcription, DNA-templated GO:0045944; biological_process; positive regulation of transcription by RNA polymerase II GO:0046849; biological_process; bone remodeling GO:0046872; molecular_function; metal ion binding GO:0047485; molecular_function; protein N-terminus binding GO:0048468; biological_process; cell development GO:0048471; cellular_component; perinuclear region of cytoplasm GO:0048661; biological_process; positive regulation of smooth muscle cell proliferation GO:0050852; biological_process; T cell receptor signaling pathway GO:0051023; biological_process; regulation of immunoglobulin secretion GO:0051091; biological_process; positive regulation of DNA-binding transcription factor activity GO:0051092; biological_process; positive regulation of NF-kappaB transcription factor activity GO:0051865; biological_process; protein autoubiquitination GO:0061630; molecular_function; ubiquitin protein ligase activity GO:0070498; biological_process; interleukin-1-mediated signaling pathway GO:0070534; biological_process; protein K63-linked ubiquitination GO:0070555; biological_process; response to interleukin-1 GO:0071222; biological_process; cellular response to lipopolysaccharide GO:2000679; biological_process; positive regulation of transcription regulatory region DNA binding
Type	Genomic
Sequence	HORVU.MOREX.r2.6HG0473120.1
Source Species	Hordeum vulgare
Source Germplasm	Morex (barley)