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GrainGenes Probe Report: HORVU.MOREX.r2.6HG0493390

[Submit comment/correction][What is a probe?]Probes originated as records of the single stranded molecules used in RFLP mapping. This term has expanded to include PCR primers and SNPs.

Note: Probe report page includes probe information, gene models, PCR Primers, and SNPs.

Probe	HORVU.MOREX.r2.6HG0493390
Locus	HORVU.MOREX.r2.6HG0493390.1
URL	Gene Ontology GO:0003824 [ Show all 14 ]
Reference	Monat C et al. (2019) TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools Genome Biology 20:284.
General Remarks	[ Hide all but 1 of 16 ] Confidence level 1 = HC: High Confidence. Confidence level 2 = HC2: Complete protein with a BLAST hit in UniPoa (validated proteins from Poaceae), but no BLAST hit in UniMag (validated proteins from Magnoliophyta) or TREP (Triticeae REPetitive elements database). Functional annotation published with the genome: Retrotransposon protein, putative, Ty1-copia subclass GO:0003824; molecular_function; catalytic activity GO:0005737; cellular_component; cytoplasm GO:0006364; biological_process; rRNA processing GO:0008033; biological_process; tRNA processing GO:0008168; molecular_function; methyltransferase activity GO:0008173; molecular_function; RNA methyltransferase activity GO:0016740; molecular_function; transferase activity GO:0030488; biological_process; tRNA methylation GO:0032259; biological_process; methylation GO:0046872; molecular_function; metal ion binding GO:0051536; molecular_function; iron-sulfur cluster binding GO:0051539; molecular_function; 4 iron, 4 sulfur cluster binding GO:0070040; molecular_function; rRNA (adenine-C2-)-methyltransferase activity GO:0070475; biological_process; rRNA base methylation
Type	Genomic
Sequence	HORVU.MOREX.r2.6HG0493390.1
Source Species	Hordeum vulgare
Source Germplasm	Morex (barley)