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GrainGenes Probe Report: HORVU.MOREX.r2.6HG0496320

[Submit comment/correction][What is a probe?]Probes originated as records of the single stranded molecules used in RFLP mapping. This term has expanded to include PCR primers and SNPs.

Note: Probe report page includes probe information, gene models, PCR Primers, and SNPs.

Probe	HORVU.MOREX.r2.6HG0496320
Locus	HORVU.MOREX.r2.6HG0496320.1
URL	Gene Ontology GO:0000139 [ Show all 78 ]
Reference	Monat C et al. (2019) TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools Genome Biology 20:284.
General Remarks	[ Hide all but 1 of 80 ] Confidence level 1 = HC: High Confidence. Confidence level 2 = HC1: Complete protein with subject and query coverage above the BLAST threshold in the UniMag database (validated proteins from Magnoliophyta). Functional annotation published with the genome: Cytochrome b561 GO:0000139; cellular_component; Golgi membrane GO:0000166; molecular_function; nucleotide binding GO:0000266; biological_process; mitochondrial fission GO:0001891; cellular_component; phagocytic cup GO:0001917; cellular_component; photoreceptor inner segment GO:0002031; biological_process; G protein-coupled receptor internalization GO:0003281; biological_process; ventricular septum development GO:0003374; biological_process; dynamin family protein polymerization involved in mitochondrial fission GO:0003924; molecular_function; GTPase activity GO:0005515; molecular_function; protein binding GO:0005525; molecular_function; GTP binding GO:0005634; cellular_component; nucleus GO:0005737; cellular_component; cytoplasm GO:0005768; cellular_component; endosome GO:0005794; cellular_component; Golgi apparatus GO:0005802; cellular_component; trans-Golgi network GO:0005813; cellular_component; centrosome GO:0005829; cellular_component; cytosol GO:0005856; cellular_component; cytoskeleton GO:0005874; cellular_component; microtubule GO:0005886; cellular_component; plasma membrane GO:0005905; cellular_component; clathrin-coated pit GO:0006893; biological_process; Golgi to plasma membrane transport GO:0006897; biological_process; endocytosis GO:0006898; biological_process; receptor-mediated endocytosis GO:0006909; biological_process; phagocytosis GO:0007283; biological_process; spermatogenesis GO:0008017; molecular_function; microtubule binding GO:0009416; biological_process; response to light stimulus GO:0010592; biological_process; positive regulation of lamellipodium assembly GO:0014069; cellular_component; postsynaptic density GO:0016020; cellular_component; membrane GO:0016787; molecular_function; hydrolase activity GO:0017124; molecular_function; SH3 domain binding GO:0019901; molecular_function; protein kinase binding GO:0030027; cellular_component; lamellipodium GO:0030054; cellular_component; cell junction GO:0030136; cellular_component; clathrin-coated vesicle GO:0030496; cellular_component; midbody GO:0030512; biological_process; negative regulation of transforming growth factor beta receptor signaling pathway GO:0030516; biological_process; regulation of axon extension GO:0030670; cellular_component; phagocytic vesicle membrane GO:0031410; cellular_component; cytoplasmic vesicle GO:0031623; biological_process; receptor internalization GO:0031749; molecular_function; D2 dopamine receptor binding GO:0031966; cellular_component; mitochondrial membrane GO:0032587; cellular_component; ruffle membrane GO:0032991; cellular_component; protein-containing complex GO:0033572; biological_process; transferrin transport GO:0035020; biological_process; regulation of Rac protein signal transduction GO:0035904; biological_process; aorta development GO:0036312; molecular_function; phosphatidylinositol 3-kinase regulatory subunit binding GO:0042220; biological_process; response to cocaine GO:0042995; cellular_component; cell projection GO:0044351; biological_process; macropinocytosis GO:0044877; molecular_function; protein-containing complex binding GO:0045202; cellular_component; synapse GO:0045211; cellular_component; postsynaptic membrane GO:0045334; cellular_component; clathrin-coated endocytic vesicle GO:0045429; biological_process; positive regulation of nitric oxide biosynthetic process GO:0045807; biological_process; positive regulation of endocytosis GO:0048471; cellular_component; perinuclear region of cytoplasm GO:0048812; biological_process; neuron projection morphogenesis GO:0050699; molecular_function; WW domain binding GO:0050766; biological_process; positive regulation of phagocytosis GO:0050998; molecular_function; nitric-oxide synthase binding GO:0060976; biological_process; coronary vasculature development GO:0061025; biological_process; membrane fusion GO:0071245; biological_process; cellular response to carbon monoxide GO:0071481; biological_process; cellular response to X-ray GO:0071732; biological_process; cellular response to nitric oxide GO:1900026; biological_process; positive regulation of substrate adhesion-dependent cell spreading GO:1902856; biological_process; negative regulation of non-motile cilium assembly GO:1903351; biological_process; cellular response to dopamine GO:1903358; biological_process; regulation of Golgi organization GO:1903408; biological_process; positive regulation of sodium:potassium-exchanging ATPase activity GO:1903526; biological_process; negative regulation of membrane tubulation GO:2000370; biological_process; positive regulation of clathrin-dependent endocytosis
Type	Genomic
Sequence	HORVU.MOREX.r2.6HG0496320.1
Source Species	Hordeum vulgare
Source Germplasm	Morex (barley)