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GrainGenes Probe Report: HORVU.MOREX.r2.6HG0511480

[Submit comment/correction][What is a probe?]Probes originated as records of the single stranded molecules used in RFLP mapping. This term has expanded to include PCR primers and SNPs.

Note: Probe report page includes probe information, gene models, PCR Primers, and SNPs.

Probe	HORVU.MOREX.r2.6HG0511480
Locus	HORVU.MOREX.r2.6HG0511480.1
URL	Gene Ontology GO:0000398 [ Show all 15 ]
Reference	Monat C et al. (2019) TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools Genome Biology 20:284.
General Remarks	[ Hide all but 1 of 17 ] Confidence level 1 = HC: High Confidence. Confidence level 2 = HC2: Complete protein with a BLAST hit in UniPoa (validated proteins from Poaceae), but no BLAST hit in UniMag (validated proteins from Magnoliophyta) or TREP (Triticeae REPetitive elements database). Functional annotation published with the genome: Zinc finger (C3HC4-type RING finger) family protein GO:0000398; biological_process; mRNA splicing, via spliceosome GO:0005634; cellular_component; nucleus GO:0005681; cellular_component; spliceosomal complex GO:0005730; cellular_component; nucleolus GO:0008380; biological_process; RNA splicing GO:0009651; biological_process; response to salt stress GO:0009737; biological_process; response to abscisic acid GO:0010228; biological_process; vegetative to reproductive phase transition of meristem GO:0010555; biological_process; response to mannitol GO:0036002; molecular_function; pre-mRNA binding GO:0042752; biological_process; regulation of circadian rhythm GO:0045893; biological_process; positive regulation of transcription, DNA-templated GO:1901002; biological_process; positive regulation of response to salt stress GO:1902584; biological_process; positive regulation of response to water deprivation GO:2000028; biological_process; regulation of photoperiodism, flowering
Type	Genomic
Sequence	HORVU.MOREX.r2.6HG0511480.1
Source Species	Hordeum vulgare
Source Germplasm	Morex (barley)