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GrainGenes Probe Report: TraesCS1D01G311400

[Submit comment/correction][What is a probe?]Probes originated as records of the single stranded molecules used in RFLP mapping. This term has expanded to include PCR primers and SNPs.

Note: Probe report page includes probe information, gene models, PCR Primers, and SNPs.

Probe	TraesCS1D01G311400
Locus	TraesCS1D01G311400.2
URL	[ Hide all but 1 of 26 ] Pfam PF14632 Pfam PF14641 Pfam PF14639 Pfam PF14635 Pfam PF14878 Pfam PF14633 InterPro IPR000980 InterPro IPR003029 InterPro IPR006641 InterPro IPR010994 InterPro IPR012337 InterPro IPR012340 InterPro IPR017072 InterPro IPR023319 InterPro IPR023323 InterPro IPR027999 InterPro IPR028083 InterPro IPR028088 InterPro IPR028231 InterPro IPR032706 Gene Ontology GO:0003676 Gene Ontology GO:0003677 Gene Ontology GO:0006139 Gene Ontology GO:0006357 Gene Ontology GO:0032784 Gene expression at wheat-expression.com (expVIP)
Reference	IWGSC et al. (2018) Shifting the limits in wheat research and breeding using a fully annotated reference genome Science 361.
General Remarks	BLAST Hit Accession: tr|M8BLK9|M8BLK9_AEGTA Human Readable Description: Transcription elongation factor SPT6 Pfam IDs Description: PF14632: Acidic N-terminal SPT6; PF14641: Helix-turn-helix DNA-binding domain of SPT6; PF14639: Holliday-junction resolvase-like of SPT6; PF14635: Helix-hairpin-helix motif; PF14878: Death-like domain of SPT6; PF14633: SH2 domain InterPro IDs Description: IPR000980: SH2 domain; IPR003029: S1 domain; IPR006641: YqgF/RNase H-like domain; IPR010994: RuvA domain 2-like; IPR012337: Ribonuclease H-like domain; IPR012340: Nucleic acid-binding, OB-fold; IPR017072: Transcription elongation factor Spt6; IPR023319: Tex-like protein, HTH domain; IPR023323: Tex-like domain; IPR027999: Death-like domain of Spt6; IPR028083: Spt6 acidic, N-terminal domain; IPR028088: Helix-turn-helix DNA-binding domain of Spt6; IPR028231: Transcription elongation factor Spt6, YqgF domain; IPR032706: Transcription elongation factor Spt6, helix-hairpin-helix motif GO IDs Description via InterPro: GO:0003676 MF: nucleic acid binding; GO:0003677 MF: DNA binding; GO:0006139 BP: nucleobase-containing compound metabolic process; GO:0006357 BP: regulation of transcription from RNA polymerase II promoter; GO:0032784 BP: regulation of DNA-templated transcription, elongation
Type	Genomic
Sequence	TraesCS1D01G311400.1 TraesCS1D01G311400.2
Source Species	Triticum aestivum
Source Germplasm	Chinese Spring