Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Probe Report: TraesCS6A01G207500

[Submit comment/correction][What is a probe?]Probes originated as records of the single stranded molecules used in RFLP mapping. This term has expanded to include PCR primers and SNPs.

Note: Probe report page includes probe information, gene models, PCR Primers, and SNPs.

Probe	TraesCS6A01G207500
Locus	TraesCS6A01G207500.1
URL	[ Hide all but 1 of 23 ] Pfam PF02776 Pfam PF16582 Pfam PF02775 Pfam PF13378 Pfam PF12697 InterPro IPR000073 InterPro IPR004433 InterPro IPR011766 InterPro IPR012001 InterPro IPR013342 InterPro IPR018110 InterPro IPR029017 InterPro IPR029035 InterPro IPR029058 InterPro IPR029061 InterPro IPR029065 InterPro IPR032264 Gene Ontology GO:0003824 Gene Ontology GO:0009063 Gene Ontology GO:0009234 Gene Ontology GO:0030976 Gene Ontology GO:0070204 Gene expression at wheat-expression.com (expVIP)
Reference	IWGSC et al. (2018) Shifting the limits in wheat research and breeding using a fully annotated reference genome Science 361.
General Remarks	BLAST Hit Accession: tr|A0A151SJF5|A0A151SJF5_CAJCA Human Readable Description: 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase Pfam IDs Description: PF02776: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; PF16582: Middle domain of thiamine pyrophosphate; PF02775: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; PF13378: Enolase C-terminal domain-like; PF12697: Alpha/beta hydrolase family InterPro IDs Description: IPR000073: Alpha/beta hydrolase fold-1; IPR004433: 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase; IPR011766: Thiamine pyrophosphate enzyme, C-terminal TPP-binding; IPR012001: Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain; IPR013342: Mandelate racemase/muconate lactonizing enzyme, C-terminal; IPR018110: Mandelate racemase/muconate lactonizing enzyme, conserved site; IPR029017: Enolase N-terminal domain-like; IPR029035: DHS-like NAD/FAD-binding domain; IPR029058: Alpha/Beta hydrolase fold; IPR029061: Thiamin diphosphate-binding fold; IPR029065: Enolase C-terminal domain-like; IPR032264: Menaquinone biosynthesis protein MenD, middle domain GO IDs Description via InterPro: GO:0003824 MF: catalytic activity; GO:0009063 BP: cellular amino acid catabolic process; GO:0009234 BP: menaquinone biosynthetic process; GO:0030976 MF: thiamine pyrophosphate binding; GO:0070204 MF: 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase activity
Type	Genomic
Sequence	TraesCS6A01G207500.1
Source Species	Triticum aestivum
Source Germplasm	Chinese Spring