TABLE 1.1
: Plant BAC libraries constructed by the authors and their associates using techniques described in this guide. Except where noted, 1C-genome sizes are from Arumuganathan and Earle (1991).|
Species 'cultivar' |
Genome size (Mb/1C) |
Number of BAC clones |
Mean insert size (kb) |
Genome coverage |
Reference |
|
Arabidopsis thaliana 'Columbia' |
100a |
12,672 |
100 |
12.0 |
Choi et al. 1995 |
|
Carica papaya 'Sunup' |
372 |
39,168 |
132 |
13.0 |
Ming et al., in prep. |
|
Poncirus trifoliata 'Rubidoux' |
382b |
45,312 |
76 |
9.0 |
Yang et al. 1999 |
|
Glycine max 'P1437654' |
1,115 |
73,728 |
136 |
8.7 |
Tomkins et al. 1999a |
|
Glycine max 'A3244' |
1,115 |
326,000 |
148 |
27.0 |
Tomkins et al. 2000a |
|
Gossypium barbadense 'Pima S6' |
2,895c |
99,840 |
100 |
5.0 |
Abbey et al., in prep. |
|
Gossypium hirsutum 'Maxxa' |
2,246d |
147,456 |
140 |
9.2 |
Tomkins et al., in prep. |
|
Gossypium hirsutum Tamcot GCNH |
2,246d |
51,456 |
110 |
2.5 |
see CUGI website |
|
Gossypium raimondii |
1,255c |
92,160 |
120 |
9.0 |
Peterson et al., in prep. |
|
Hordeum vulgare 'Morex' |
5,000 |
313,344 |
110 |
6.3 |
Yu et al. 1999 |
|
Solanum lycopersicum 'Heinz 1706' |
954e |
129,024 |
115 |
15.0 |
Budiman et al. submitted |
|
Oryza sativa japonica 'Nipponbare' |
427e |
36,864 |
130 |
10.6 |
see CUGI website |
|
Oryza sativa japonica 'Azucena' |
427e |
38,784 |
80 |
6.8 |
see CUGI website |
|
Oryza sativa japonica 'Lemont' |
427e |
7,296 |
150 |
2.6 |
Zhang et al. 1996 |
|
Oryza sativa indica 'Tequing' |
441e |
14,208 |
130 |
4.4 |
Zhang et al. 1996 |
|
Saccharum officinarum 'R570' |
3,076e |
103,296 |
130 |
4.5 |
Tomkins et al. 1999b |
|
Sorghum bicolor 'BTx623' |
760e |
13,440 |
130 |
2.6 |
Woo et al. 1994 |
|
Sorghum propinquum |
760-835f |
38,016 |
126 |
6.6 |
Lin et al. 2000 |
|
Triticum monococcum |
5,751 |
276,480 |
115 |
5.6 |
Lijavetzky et al., 1999 |
|
Vitis vinifera 'Syrah' |
483 |
55,296 |
135 |
16.0 |
Tomkins et al., in prep. |
|
Zea mays 'LH132' |
2,504e |
422,400 |
120 |
20.2 |
Tomkins et al. 2000b |
|
Zea mays 'B73' |
2,504e |
239,616 |
140 |
13.5 |
Tomkins et al. 2000c |
|
Zea mays 'Mo17' |
2,504e |
150,000 |
120 |
20.2 |
Tomkins et al. 2000b |
a Value from Goodman et al. (1995)
b
Estimate based on genome size of Citrus sinensis (Arumaganathan and Earle 1991), a close relative of Poncirus trifoliatac
From Bennett et al. (1982)d
Mean of two values given for this species in Arumuganathan and Earle (1991)e
Median for a range of values given for this species in Arumuganathan and Earle (1991)f
K. Arumuganathan, personal communication