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GrainGenes Marker Report: ABC309

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Locus	ABC309
Type	RFLP
Synonym	Synonym ABC309
Chromosome	2H 5H
Chromosome Arm	5HL
Map	Barley-consensus-2003-2H 69.4 [ Show all 23 ]
	[ Show Nearby Loci ]
QTL with Locus Marker	QABA.HaTR-5H QDrm.StMo-5H.2 QSsg.HaTR-5H
Map Data	Barley consensus [ Show all 22 ]
Species	Hordeum vulgare
Probe	ABC309
Reference	Varshney RK et al. (2007) A high density barley microsatellite consensus map with 775 SSR loci. Theoretical and Applied Genetics 114:1091. Wenzl P et al. (2006) A high-density consensus map of barley linking DArT markers to SSR, RFLP and STS loci and agricultural traits BMC Genomics 7:206. Rostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527.
Data Source	Blake, Tom 05.04.19 Langridge, Peter J.
Remark	Number of populations contributing to the placement of ABC309 in the Barley, Consensus 2006 DArT maps = 1 Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb' Mapping population(s) used for locus placement on the 'Barley, Integrated, Marcel 2009' Map Set = Steptoe x Morex,Igri x Franka Loci in 'Barley, Consensus 2006, Marcel' mapped in population(s) : Steptoe x Morex; Igri x Franka Locus in 'Barley, Consensus 2007, SSR' was a BIN marker in 'Barley, Consensus 2006, Marcel'
Possible Orthologs	ABC309B Xabc309
Probe	ABC309
Locus	ABC309 ABC309B Xabc309
External Databases	DDBJ EMBL GenBank
Remarks	Steptoe malt cDNA
Type	cDNA STS
PCR primers	TGG GAT TCT AAA CTG TCA AT TCG GCG GTC TCA GAT TTC AG
STS primers	5' GAGATACCACTGGGATTCTA 5' CCCGGTTCAAAAAAGAAGAT
STS size	ca. 600
Amplification Conditions	STS annealing temperature 55-58 oC
Sequence	L43948 ABC309 ABC309-5 ABC309-3
Linkage Group	Group 7
Source Species	Hordeum vulgare
Insert Size	1.3