GrainGenes Marker Report: ABG380
Locus
ABG380
Type
RFLP STS
Synonym
Synonym cer-ze (Hordeum)
Chromosome
7H
Chromosome Arm
7HS
Map
Barley-consensus-2003-7H 38.5
[ Show all 34 ]
[ Show Nearby Loci ]
QTL with Locus Marker
MetaQ.FHB_7H_5 QGwe.HaTR-7H.1
Map Data
Barley consensus
[ Show all 33 ]
Species
Hordeum vulgare
Probe
ABG380
Associated Gene
cer-ze (Hordeum)
Gene Class
Eceriferum (glossy)
Reference
Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
[ Show all 8 ]
Data Source
Blake, Tom 05.04.19 Close, Timothy J. Langridge, Peter J.
Remark
Number of populations contributing to the placement of ABG380 in the Barley, Consensus 2006 DArT maps = 2 Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb' Mapping population(s) used for locus placement on the 'Barley, Integrated, Marcel 2009' Map Set = Steptoe x Morex,Oregon Wolfe Barleys,Igri x Franka Loci in 'Barley, Consensus 2006, Marcel' mapped in population(s) : Steptoe x Morex; Oregon Wolfe Dom x Rec; Igri x Franka Locus in 'Barley, Consensus 2007, SSR' was a BIN marker in 'Barley, Consensus 2006, Marcel'
Possible Orthologs
ABG380-7H
Gene Associated with Locus
cer-ze (Hordeum)
Full Name
Eceriferum-ze (Glossy leaf 5) ++ ++ -
Synonym
Synonym gl5
Gene Class
Eceriferum (glossy)
Locus
ABG380 cer-ze
Reference
Lundqvist U (1991) Coordinator's report: Eceriferum genes. Barley Genetics Newsletter 20:84.
URL
Gene report page at the International Database for Barley Genes and Barley Genetic Stocks (NordGen)
Chromosome
7H
Info Source
von Wettstein-Knowles P (1993) Barley (Hordeum vulgare) 2N = 14. Genetic maps: Locus Maps of Complex Genomes.
Probe
ABG380
Locus
ABG380 ABG380-7H
External Databases
DDBJ EMBL GenBank
Remarks
Shin Ebisu16 gDNA
Type
Genomic STS
PCR primers
CAC GAA CAG AAG GAG ACT AA
AAA CCC TAC ATC ATC TTT TT
STS primers
5' AAGCCCAAACAACTAGAAAGG
5' GCTGTCAACAGGAAGAAACCC
STS size
477
Amplification Conditions
STS annealing temperature 55-58 oC
Sequence
L43987 ABG380 ABG380-5
Linkage Group
Group 1
Source Species
Hordeum vulgare
Insert Size
0.7
GrainGenes Marker Report: ABG380
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